CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006939_P001	Maize	cytosol	94.05	95.47
Os07t0637400-01	Rice	plasma membrane	89.59	90.6
TraesCS2D01G154800.1	Wheat	cytosol	87.36	87.36
TraesCS2B01G174800.1	Wheat	cytosol	87.36	87.36
TraesCS2A01G149700.1	Wheat	cytosol	86.99	86.99
EER92219	Sorghum	cytosol	79.93	78.75
GSMUA_Achr2P07740_001	Banana	cytosol	77.7	77.41
GSMUA_Achr5P21000_001	Banana	cytosol	76.21	77.07
GSMUA_Achr11P...	Banana	cytosol	75.46	76.32
Solyc12g098950.1.1	Tomato	cytosol	73.61	73.33
PGSC0003DMT400011730	Potato	cytosol	73.23	72.96
AT1G48240.1	Thale cress	cytosol	71.38	72.45
VIT_05s0020g00750.t01	Wine grape	cytosol	71.38	71.38
KRH19506	Soybean	cytosol	71.38	71.38
AT3G17440.1	Thale cress	cytosol	71.0	71.0
CDY63023	Canola	cytosol	71.38	70.85
CDY48701	Canola	cytosol	71.38	70.85
Bra021248.1-P	Field mustard	cytosol	71.38	70.85
CDX75916	Canola	cytosol	71.38	70.85
KRH02465	Soybean	cytosol	70.63	70.63
Bra001663.1-P	Field mustard	cytosol	70.63	70.11
CDX92133	Canola	cytosol	70.63	70.11
CDX82368	Canola	cytosol	70.63	70.11
Bra022216.1-P	Field mustard	cytosol	70.26	69.74
CDY66384	Canola	cytosol	69.52	69.0
HORVU2Hr1G026870.4	Barley	plastid	68.77	67.52
EER90393	Sorghum	cytosol	59.85	62.89
CDX77329	Canola	cytosol	44.61	52.86
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	24.91	52.34
CDY41849	Canola	cytosol	27.14	47.71
Bra014118.1-P	Field mustard	cytosol	27.14	47.71
CDY41852	Canola	cytosol	26.77	47.06

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.2.4	EntrezGene:8063535	UniProt:C5X3B5	ncoils:Coil	EnsemblPlants:EER97617
ProteinID:EER97617	ProteinID:EER97617.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810
GO:GO:0006888	GO:GO:0006891	GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0012507
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0031902	GO:GO:0042147
GO:GO:0048280	InterPro:IPR000727	PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35
SMART:SM00397	EnsemblPlantsGene:SORBI_3002G390600	SUPFAM:SSF58038	unigene:Sbi.7982	InterPro:Sec20	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0001A83A1E	RefSeq:XP_002461096.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:74362262..74366200

Molecular Weight (calculated)

30292.8 Da

IEP (calculated)

8.815

GRAVY (calculated)

-0.471

Length

269 amino acids

Sequence
(BLAST)

001: MGSDVPMSPE LEQVDGEIQD IFRALQNGFQ KMDKIKDSSR QSKQLEDLTA KMRECKRLIK EFDRILKDEE KKNTPDVNKQ LNDKKQFMIK ELNSYVTLRK
101: TYQSSLGNKR IELFDTGNDQ VADETPVQMA SEMSNQELIS AGRKQMDQTD QAIERSKMVV AQTVEVGAQT AATLSQQTDQ MKRIGNELDS VHFSLKKASQ
201: MVKEIGRQVA TDKCIMAFLF LIVCGVIAII VVKIVNPHNK NIRDIPGLAP PAMNRKLLSV DAFGGLRAL

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.