Factsheet for GSMUA_Achr5P21000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48240.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT3G17440.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	92.11	92.11
GSMUA_Achr2P07740_001	Banana	cytosol	85.71	84.44
Os07t0637400-01	Rice	plasma membrane	77.44	77.44
Zm00001d006939_P001	Maize	cytosol	77.07	77.36
AT3G17440.1	Thale cress	cytosol	78.2	77.32
Solyc12g098950.1.1	Tomato	cytosol	78.2	77.04
Zm00001d022275_P001	Maize	plasma membrane	76.69	76.98
PGSC0003DMT400011730	Potato	cytosol	77.82	76.67
VIT_05s0020g00750.t01	Wine grape	cytosol	77.44	76.58
CDX75916	Canola	cytosol	77.82	76.38
AT1G48240.1	Thale cress	cytosol	75.94	76.23
EER97617	Sorghum	cytosol	77.07	76.21
KRH19506	Soybean	cytosol	76.69	75.84
KRH02465	Soybean	cytosol	76.32	75.46
TraesCS2B01G174800.1	Wheat	cytosol	76.32	75.46
CDY63023	Canola	cytosol	76.69	75.28
CDY48701	Canola	cytosol	76.69	75.28
Bra001663.1-P	Field mustard	cytosol	76.69	75.28
CDX82368	Canola	cytosol	76.69	75.28
Bra021248.1-P	Field mustard	cytosol	76.69	75.28
TraesCS2D01G154800.1	Wheat	cytosol	75.56	74.72
Zm00001d029281_P007	Maize	extracellular, plasma membrane	76.69	74.18
EER92219	Sorghum	cytosol	75.94	73.99
TraesCS2A01G149700.1	Wheat	cytosol	74.81	73.98
CDX92133	Canola	cytosol	75.19	73.8
Bra022216.1-P	Field mustard	cytosol	74.81	73.43
CDY66384	Canola	cytosol	74.44	73.06
TraesCS4D01G161700.1	Wheat	cytosol	74.44	72.53
TraesCS4B01G157900.2	Wheat	cytosol	73.68	71.79
Os03t0369800-01	Rice	plasma membrane	74.06	71.64
TraesCS4A01G162300.1	Wheat	cytosol	72.56	70.7
GSMUA_Achr11P...	Banana	cytosol	67.29	70.2
GSMUA_Achr2P07950_001	Banana	cytosol	10.53	70.0
GSMUA_Achr10P...	Banana	cytosol	65.04	64.07
HORVU2Hr1G026870.4	Barley	plastid	61.28	59.49
GSMUA_Achr2P07960_001	Banana	cytosol	22.56	58.82
CDX77329	Canola	cytosol	50.0	58.59
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	25.56	53.12
Bra014118.1-P	Field mustard	cytosol	30.45	52.94
CDY41849	Canola	cytosol	30.45	52.94
CDY41852	Canola	cytosol	28.57	49.67

Protein Annotations

EnsemblPlants:GSMUA_Achr5P21000_001	EnsemblPlants:GSMUA_Achr5T21000_001	EnsemblPlantsGene:GSMUA_Achr5G21000_001	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35
PFscan:PS50192	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI000295BA5F	UniProt:M0T0C9
MapMan:22.7.2.4	:	:	:	:	:

Description

Novel plant SNARE 13 [Source:GMGC_GENE;Acc:GSMUA_Achr5G21000_001]

Coordinates

chr5:-:22888945..22901237

Molecular Weight (calculated)

30065.5 Da

IEP (calculated)

7.354

GRAVY (calculated)

-0.482

Length

266 amino acids

Sequence
(BLAST)

001: MASDLPINPE LEEIDGKIQD IFRALQNGFQ KLDKIKDPNR QSKQLEELTG KMRECKRLIK EFDRELKDQE SRNPPEVNKQ LNEKKQTMIK ELNSYVALRK
101: TFQSNLGNKR VELFDMGAET SDAVAEENVK MASDMSNQEL IDAGRKQMDE TDQAIERSKM VVGQTVEVGI QTTANLKGQT EQMGRIVNEL DTIHFSIKKA
201: SQLVKEIGRQ VATDKCIMFF LFLLVCGVIA IIIVKIVHPN NKNIRDIPGL APPAGRKLLS LEVLGN

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.