Factsheet for TraesCS4D01G161700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G157900.2	Wheat	cytosol	98.53	98.53
TraesCS4A01G162300.1	Wheat	cytosol	97.44	97.44
Zm00001d029281_P007	Maize	extracellular, plasma membrane	86.81	86.18
EER92219	Sorghum	cytosol	85.71	85.71
Os03t0369800-01	Rice	plasma membrane	84.98	84.36
TraesCS2D01G154800.1	Wheat	cytosol	79.49	80.67
GSMUA_Achr2P07740_001	Banana	cytosol	74.36	75.19
GSMUA_Achr5P21000_001	Banana	cytosol	72.53	74.44
GSMUA_Achr11P...	Banana	cytosol	71.79	73.68
VIT_05s0020g00750.t01	Wine grape	cytosol	69.96	71.0
Solyc12g098950.1.1	Tomato	cytosol	69.6	70.37
PGSC0003DMT400011730	Potato	cytosol	69.23	70.0
AT3G17440.1	Thale cress	cytosol	67.77	68.77
AT1G48240.1	Thale cress	cytosol	66.3	68.3
CDX75916	Canola	cytosol	67.77	68.27
KRH19506	Soybean	cytosol	67.03	68.03
CDX92133	Canola	cytosol	67.4	67.9
CDX82368	Canola	cytosol	67.03	67.53
Bra001663.1-P	Field mustard	cytosol	67.03	67.53
Bra022216.1-P	Field mustard	cytosol	67.03	67.53
CDY48701	Canola	cytosol	66.67	67.16
Bra021248.1-P	Field mustard	cytosol	66.67	67.16
CDY63023	Canola	cytosol	66.67	67.16
KRH02465	Soybean	cytosol	65.93	66.91
CDY66384	Canola	cytosol	66.3	66.79
TraesCS7D01G382100.1	Wheat	cytosol	57.88	60.54
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	23.81	50.78
CDX77329	Canola	cytosol	42.12	50.66
CDY41849	Canola	cytosol	25.27	45.1
Bra014118.1-P	Field mustard	cytosol	25.27	45.1
CDY41852	Canola	cytosol	24.91	44.44

Protein Annotations

EnsemblPlants:TraesCS4D01G161700.1	EnsemblPlantsGene:TraesCS4D01G161700	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:Sec20	InterPro:T_SNARE_dom
ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35	PFAM:PF03908	PFscan:PS50192	SEG:seg
SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	MapMan:22.7.2.4	:	:

Description

No Description!

Coordinates

chr4D:+:241795104..241800331

Molecular Weight (calculated)

30716.1 Da

IEP (calculated)

9.064

GRAVY (calculated)

-0.532

Length

273 amino acids

Sequence
(BLAST)

001: MASDVPMTPE LEQIDGEIQD IFRALQNGFQ KMDKIKDSNR QAKQLEDLTG KMKECKRLIK EFDRILKDEE SKNPPEVNKQ LNDRKQYMIK ELNSYVTLRK
101: TYQSSLGNNK RVELFDMGAT SSEPAADDNI QMASAMTNQQ LIDSGRNQMD QTDEAIARSK MVVAQTVEVG SQTATTLTQQ TEQMKRIGNE LDSVHFSLKK
201: ASQLVKEIGR QVATDKCIMG LLALIVFGVI AIIIVKIVNP HNKNIPDIPG MAPPAQNFQT NRRLLSAKAF RSL

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.