CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48240.1	CDX78905	AT4G19030.1	21798944
AT1G48240.1	CDX98596	AT4G19030.1	21798944
AT1G48240.1	CDX99411	AT4G19030.1	21798944
AT1G48240.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014118.1-P	Field mustard	cytosol	100.0	100.0
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	28.76	34.38
AT1G48240.1	Thale cress	cytosol	58.82	33.96
CDX77329	Canola	cytosol	49.67	33.48
CDX75916	Canola	cytosol	58.17	32.84
CDX82368	Canola	cytosol	57.52	32.47
CDY66384	Canola	cytosol	56.86	32.1
CDY63023	Canola	cytosol	56.86	32.1
CDX92133	Canola	cytosol	56.86	32.1
Solyc12g098950.1.1	Tomato	cytosol	56.21	31.85
CDY48701	Canola	cytosol	56.21	31.73
PGSC0003DMT400011730	Potato	cytosol	55.56	31.48
GSMUA_Achr2P07740_001	Banana	cytosol	54.9	31.11
VIT_05s0020g00750.t01	Wine grape	cytosol	54.25	30.86
GSMUA_Achr5P21000_001	Banana	cytosol	52.94	30.45
KRH19506	Soybean	cytosol	52.29	29.74
KRH02465	Soybean	cytosol	52.29	29.74
GSMUA_Achr11P...	Banana	cytosol	51.63	29.7
TraesCS2B01G174800.1	Wheat	cytosol	49.67	28.25
TraesCS2D01G154800.1	Wheat	cytosol	49.67	28.25
TraesCS2A01G149700.1	Wheat	cytosol	49.02	27.88
HORVU2Hr1G026870.4	Barley	plastid	49.02	27.37
Zm00001d006939_P001	Maize	cytosol	47.06	27.17
EER97617	Sorghum	cytosol	47.71	27.14
EER92219	Sorghum	cytosol	48.37	27.11
Os07t0637400-01	Rice	plasma membrane	47.06	27.07
Zm00001d022275_P001	Maize	plasma membrane	46.41	26.79
Zm00001d029281_P007	Maize	extracellular, plasma membrane	47.06	26.18
CDX84253	Canola	cytosol, nucleus, peroxisome	45.1	26.14
CDY69072	Canola	cytosol, golgi, peroxisome	44.44	25.95
CDY59046	Canola	cytosol, golgi, peroxisome	44.44	25.95
CDX84617	Canola	cytosol, golgi, peroxisome	44.44	25.95
CDY31671	Canola	cytosol, nucleus, peroxisome	44.44	25.76
TraesCS4A01G162300.1	Wheat	cytosol	45.1	25.27
TraesCS4B01G157900.2	Wheat	cytosol	45.1	25.27
TraesCS4D01G161700.1	Wheat	cytosol	45.1	25.27
Os03t0369800-01	Rice	plasma membrane	44.44	24.73
GSMUA_Achr2P07960_001	Banana	cytosol	11.11	16.67
CDY41852	Canola	cytosol	15.03	15.03
GSMUA_Achr2P07950_001	Banana	cytosol	1.96	7.5
HORVU1Hr1G069840.13	Barley	extracellular	9.15	6.8

Protein Annotations

EnsemblPlants:CDY41849	EnsemblPlantsGene:GSBRNA2T00073779001	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom	PANTHER:PTHR21230
PANTHER:PTHR21230:SF27	PFscan:PS50192	ProteinID:CDY41849	ProteinID:CDY41849.1	SMART:SM00397	SUPFAM:SSF58038
UniParc:UPI0002546741	UniProt:A0A078HWU1	MapMan:22.7.2.4	:	:	:

Description

BnaA08g03440DBnaA08g03440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWU1]

Coordinates

chrLK032508:+:189034..190173

Molecular Weight (calculated)

17194.9 Da

IEP (calculated)

8.987

GRAVY (calculated)

-0.513

Length

153 amino acids

Sequence
(BLAST)

001: MKDSNRQSKQ LEELAGRMRN SKRCTLGNKK VDLFGYGSWI QQVNPQQKKM CLHVSLCLHE VAIGSLKLLA ATSMSNQELV DAGMRRMDET DQAIEHPKQV
101: VHQTVEIDTQ TAANLKGQAD QMGRVGNDLD TIQFSIKKAS KLVKEIERQV CII

Best Arabidopsis Sequence Match ( AT1G48240.1 )
(BLAST)

001: MASELPMSPH LEQIHGEIRD HFRALANGFQ RLDKIKDSSR QSKQLEELAE KMRDCKRLVK EFDRELKDGE ARNSPQVNKQ LNDEKQSMIK ELNSYVALRK
101: TYLNTLGNKK VELFDTGAGV SGEPTAEENV QMASTMSNQE LVDAGMKRMD ETDQAIERSK QVVHQTLEVG TQTASNLKGQ TDQMGRVVND LDTIQFSLKK
201: ASQLVKEIGR QVATDKCIMA FLFLIVCGVI AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYFRE

Arabidopsis Description

NPSN12Novel plant SNARE 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNH6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.