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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 23353019
mitochondrion: 27297264
plasma membrane: 27341663
msms PMID: 23353019 doi
D Hopff, S Wienkoop, S Lüthje
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d006939_P001 Maize cytosol 95.09 95.09
Zm00001d035886_P001 Maize cytosol, plasma membrane, plastid 20.75 94.83
Os07t0637400-01 Rice plasma membrane 90.19 89.85
TraesCS2D01G154800.1 Wheat cytosol 87.55 86.25
TraesCS2B01G174800.1 Wheat cytosol 87.55 86.25
TraesCS2A01G149700.1 Wheat cytosol 87.17 85.87
Zm00001d029281_P007 Maize extracellular, plasma membrane 82.64 79.64
GSMUA_Achr5P21000_001 Banana cytosol 76.98 76.69
GSMUA_Achr11P... Banana cytosol 76.23 75.94
GSMUA_Achr2P07740_001 Banana cytosol 77.36 75.93
Solyc12g098950.1.1 Tomato cytosol 73.96 72.59
PGSC0003DMT400011730 Potato cytosol 73.58 72.22
AT1G48240.1 Thale cress cytosol 71.32 71.32
KRH19506 Soybean cytosol 71.7 70.63
KRH02465 Soybean cytosol 71.32 70.26
VIT_05s0020g00750.t01 Wine grape cytosol 71.32 70.26
CDX75916 Canola cytosol 71.7 70.11
AT3G17440.1 Thale cress cytosol 70.94 69.89
Bra001663.1-P Field mustard cytosol 70.94 69.37
CDX82368 Canola cytosol 70.94 69.37
CDY63023 Canola cytosol 70.57 69.0
CDY48701 Canola cytosol 70.57 69.0
Bra021248.1-P Field mustard cytosol 70.57 69.0
CDY66384 Canola cytosol 70.19 68.63
CDX92133 Canola cytosol 70.19 68.63
Bra022216.1-P Field mustard cytosol 69.81 68.27
HORVU2Hr1G026870.4 Barley plastid 69.81 67.52
Zm00001d036406_P001 Maize mitochondrion, plasma membrane 60.38 55.36
Zm00001d030296_P001 Maize plastid 27.92 52.48
CDX77329 Canola cytosol 44.15 51.54
CDY53169 Canola cytosol, endoplasmic reticulum, mitochondrion, nucleus 24.53 50.78
Zm00001d005031_P001 Maize plastid 26.04 48.94
Zm00001d020848_P001 Maize plastid 26.04 48.94
CDY41852 Canola cytosol 27.17 47.06
CDY41849 Canola cytosol 26.79 46.41
Bra014118.1-P Field mustard cytosol 26.79 46.41
Protein Annotations
Gene3D:1.20.5.110EntrezGene:100285150MapMan:22.7.2.4UniProt:B6U1B4EMBL:BT055461ncoils:Coil
EMBL:EU971029GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:IPR000727ProteinID:ONM60018.1
PFAM:PF03908PFscan:PS50192PANTHER:PTHR21230PANTHER:PTHR21230:SF35SMART:SM00397SUPFAM:SSF58038
InterPro:Sec20TMHMM:TMhelixInterPro:T_SNARE_domUniParc:UPI000182E994EnsemblPlantsGene:Zm00001d022275EnsemblPlants:Zm00001d022275_P001
EnsemblPlants:Zm00001d022275_T001SEG:seg::::
Description
Novel plant SNARE 13
Coordinates
chr7:+:174207485..174211005
Molecular Weight (calculated)
29877.3 Da
IEP (calculated)
8.815
GRAVY (calculated)
-0.482
Length
265 amino acids
Sequence
(BLAST)
001: MSTDVPMSPE LEQVDGEIQD IFRALQNGFQ KMDKIKDSSR QSKQLEDLTA KMRECKRLIK EFDRILKDEE KKNTPDVNKQ LNDKKQFMIK ELNSYVTLRK
101: TYQSSLGNKR IELFDTGNDQ VAEGTPVQMA SEMSNQELIS TGRKQMDQTD QAIERSKMVV AQTVEVGAQT AATLTQQTEQ MKRIGNELDS VHFSLKKASQ
201: MVKEIGRQVA TDKCIMAFLF LIVCGVIAII VVKIVNPHNK NIRDIPGLAP PAMNRKLLSI DAAGL
Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)
001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
Arabidopsis Description
NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.