Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035886_P001 | Maize | cytosol, plasma membrane, plastid | 37.59 | 91.38 |
| Zm00001d005031_P001 | Maize | plastid | 78.72 | 78.72 |
| Zm00001d020848_P001 | Maize | plastid | 78.72 | 78.72 |
| Zm00001d022275_P001 | Maize | plasma membrane | 52.48 | 27.92 |
| Zm00001d006939_P001 | Maize | cytosol | 51.06 | 27.17 |
| Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 46.81 | 24.0 |
| Zm00001d036406_P001 | Maize | mitochondrion, plasma membrane | 41.13 | 20.07 |
Protein Annotations
| EnsemblPlants:Zm00001d030296_P001 | EnsemblPlants:Zm00001d030296_T001 | EnsemblPlantsGene:Zm00001d030296 | Gene3D:1.20.5.110 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF35 | ProteinID:ONM00760.1 | SEG:seg | SUPFAM:SSF58038 |
| TMHMM:TMhelix | UniParc:UPI0008449362 | UniProt:A0A1D6KBT0 | MapMan:22.7.2.4 | : | : |
Description
Novel plant SNARE 13
Coordinates
chr1:-:120070718..120072280
Molecular Weight (calculated)
15326.2 Da
IEP (calculated)
11.082
GRAVY (calculated)
0.417
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MATIPTTDSG LVLSSSALLR RTRRAASSVT VRLPAVARRR PQLLVCASAE EIAFDQGSRA ALQTEQMKRI GNELDSVHFS LKKASQMVKE IGRQVATDKC
101: IMAFLFLIVC GVIAIIVVKV GCRLRRVALY FFCAKVATLG A
101: IMAFLFLIVC GVIAIIVVKV GCRLRRVALY FFCAKVATLG A
001: MRDCKRLVKE FDRELKDGEA RNSPQVNKQL NDEKQSMIKE LNSYVALRKT YLNTLGNKKV ELFDTGAGVS GEPTAEENVQ MASTMSNQEL VDAGMKRMDE
101: TDQAIERSKQ VVHQTLEVGT QTASNLKGQT DQMGRVVNDL DTIQFSLKKA SQLVKEIGRQ VATDKCIMAF LFLIVCGVIA IIIVKIVNPN NKDIRDIPGL
201: APPAQSRKLL YFRE
101: TDQAIERSKQ VVHQTLEVGT QTASNLKGQT DQMGRVVNDL DTIQFSLKKA SQLVKEIGRQ VATDKCIMAF LFLIVCGVIA IIIVKIVNPN NKDIRDIPGL
201: APPAQSRKLL YFRE
Arabidopsis Description
NPSN12Novel plant SNARE 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNH6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.