Factsheet for Zm00001d006939_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022275_P001	Maize	plasma membrane	95.09	95.09
Zm00001d035886_P001	Maize	cytosol, plasma membrane, plastid	20.75	94.83
EER97617	Sorghum	cytosol	95.47	94.05
Os07t0637400-01	Rice	plasma membrane	89.43	89.1
TraesCS2D01G154800.1	Wheat	cytosol	86.42	85.13
TraesCS2B01G174800.1	Wheat	cytosol	86.42	85.13
TraesCS2A01G149700.1	Wheat	cytosol	86.04	84.76
Zm00001d029281_P007	Maize	extracellular, plasma membrane	82.64	79.64
GSMUA_Achr11P...	Banana	cytosol	77.36	77.07
GSMUA_Achr5P21000_001	Banana	cytosol	77.36	77.07
GSMUA_Achr2P07740_001	Banana	cytosol	77.74	76.3
Solyc12g098950.1.1	Tomato	cytosol	74.34	72.96
PGSC0003DMT400011730	Potato	cytosol	73.96	72.59
KRH19506	Soybean	cytosol	72.45	71.38
KRH02465	Soybean	cytosol	72.08	71.0
VIT_05s0020g00750.t01	Wine grape	cytosol	72.08	71.0
AT1G48240.1	Thale cress	cytosol	70.94	70.94
AT3G17440.1	Thale cress	cytosol	70.94	69.89
CDX75916	Canola	cytosol	71.32	69.74
CDX92133	Canola	cytosol	70.94	69.37
Bra001663.1-P	Field mustard	cytosol	70.57	69.0
CDX82368	Canola	cytosol	70.57	69.0
Bra022216.1-P	Field mustard	cytosol	70.57	69.0
CDY63023	Canola	cytosol	70.19	68.63
CDY48701	Canola	cytosol	70.19	68.63
Bra021248.1-P	Field mustard	cytosol	70.19	68.63
CDY66384	Canola	cytosol	69.43	67.9
HORVU2Hr1G026870.4	Barley	plastid	69.06	66.79
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	60.38	55.36
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	25.28	52.34
CDX77329	Canola	cytosol	44.15	51.54
Zm00001d030296_P001	Maize	plastid	27.17	51.06
Zm00001d005031_P001	Maize	plastid	25.66	48.23
Zm00001d020848_P001	Maize	plastid	25.66	48.23
CDY41849	Canola	cytosol	27.17	47.06
Bra014118.1-P	Field mustard	cytosol	27.17	47.06
CDY41852	Canola	cytosol	26.79	46.41

Protein Annotations

EnsemblPlants:Zm00001d006939_P001	EnsemblPlants:Zm00001d006939_T001	EnsemblPlantsGene:Zm00001d006939	EntrezGene:103647882	Gene3D:1.20.5.110	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000727	InterPro:Sec20	InterPro:T_SNARE_dom	ncoils:Coil
PANTHER:PTHR21230	PANTHER:PTHR21230:SF35	PFAM:PF03908	PFscan:PS50192	ProteinID:ONM25533.1	SMART:SM00397
SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0002220FF7	UniProt:A0A1D6F273	MapMan:22.7.2.4	:

Description

Novel plant SNARE 13

Coordinates

chr2:-:219891537..219894633

Molecular Weight (calculated)

29890.3 Da

IEP (calculated)

8.815

GRAVY (calculated)

-0.470

Length

265 amino acids

Sequence
(BLAST)

001: MASDVPMSPE LEQVDGEIQD IFRALQNGFQ KMDKIKDSSR QSKQLEDLTA KMRECKRLIK EFDRILKDEE KKDTPEANKQ LNDKKQFMIK ELNSYVTLRK
101: TYQSSLGNKR IELFDTGTDQ VADKSPVQMA SEMSNQELIS AGRKQMDQTD QAIERSKMVV AQTVEVGAQT AATLSQQTEQ MKRIGNELDS VHFSLKKASQ
201: MVKEIGRQVA TDKCIMAFLF LIVCGVIAII VVKIVNPHNK NIRDIPGLAP PAMNRRLLSI DALGL

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.