Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G17440.1 | Thale cress | cytosol | 92.08 | 90.71 |
| KRH19506 | Soybean | cytosol | 81.89 | 80.67 |
| Solyc12g098950.1.1 | Tomato | cytosol | 81.51 | 80.0 |
| PGSC0003DMT400011730 | Potato | cytosol | 81.13 | 79.63 |
| KRH02465 | Soybean | cytosol | 80.75 | 79.55 |
| VIT_05s0020g00750.t01 | Wine grape | cytosol | 78.11 | 76.95 |
| GSMUA_Achr11P... | Banana | cytosol | 76.6 | 76.32 |
| GSMUA_Achr2P07740_001 | Banana | cytosol | 77.74 | 76.3 |
| GSMUA_Achr5P21000_001 | Banana | cytosol | 76.23 | 75.94 |
| Os07t0637400-01 | Rice | plasma membrane | 72.08 | 71.8 |
| EER97617 | Sorghum | cytosol | 72.45 | 71.38 |
| CDX77329 | Canola | cytosol | 61.13 | 71.37 |
| Zm00001d022275_P001 | Maize | plasma membrane | 71.32 | 71.32 |
| Zm00001d006939_P001 | Maize | cytosol | 70.94 | 70.94 |
| TraesCS2B01G174800.1 | Wheat | cytosol | 71.7 | 70.63 |
| TraesCS2D01G154800.1 | Wheat | cytosol | 71.32 | 70.26 |
| TraesCS2A01G149700.1 | Wheat | cytosol | 70.57 | 69.52 |
| EER92219 | Sorghum | cytosol | 70.94 | 68.86 |
| Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 71.32 | 68.73 |
| Os03t0369800-01 | Rice | plasma membrane | 71.32 | 68.73 |
| TraesCS4D01G161700.1 | Wheat | cytosol | 68.3 | 66.3 |
| TraesCS4A01G162300.1 | Wheat | cytosol | 67.55 | 65.57 |
| TraesCS4B01G157900.2 | Wheat | cytosol | 67.55 | 65.57 |
| AT2G35190.1 | Thale cress | cytosol, nucleus, peroxisome | 64.91 | 64.91 |
| GSMUA_Achr2P07950_001 | Banana | cytosol | 9.43 | 62.5 |
| CDY41849 | Canola | cytosol | 33.96 | 58.82 |
| Bra014118.1-P | Field mustard | cytosol | 33.96 | 58.82 |
| HORVU2Hr1G026870.4 | Barley | plastid | 55.47 | 53.65 |
| GSMUA_Achr2P07960_001 | Banana | cytosol | 19.62 | 50.98 |
| HORVU1Hr1G069840.13 | Barley | extracellular | 17.36 | 22.33 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.2.4 | EntrezGene:841244 | UniProt:A0A178WLK0 | ProteinID:AAD49774.2 | ProteinID:AAF79516.1 |
| ProteinID:AEE32268.1 | EMBL:AF487545 | EMBL:AK117322 | ArrayExpress:AT1G48240 | EnsemblPlantsGene:AT1G48240 | RefSeq:AT1G48240 |
| TAIR:AT1G48240 | RefSeq:AT1G48240-TAIR-G | EnsemblPlants:AT1G48240.1 | TAIR:AT1G48240.1 | Symbol:ATNPSN12 | EMBL:BT005271 |
| ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006623 | GO:GO:0006810 |
| GO:GO:0006888 | GO:GO:0006891 | GO:GO:0006896 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 |
| GO:GO:0012507 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 |
| GO:GO:0031902 | GO:GO:0042147 | GO:GO:0048280 | InterPro:IPR000727 | RefSeq:NP_175258.2 | ProteinID:OAP18435.1 |
| PFAM:PF12352 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50192 |
| PANTHER:PTHR21230 | PANTHER:PTHR21230:SF35 | UniProt:Q541Y4 | UniProt:Q9LNH6 | SMART:SM00397 | SUPFAM:SSF58038 |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00000041ED | SEG:seg | : | : |
Description
NPSN12Novel plant SNARE 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNH6]
Coordinates
chr1:-:17808988..17812106
Molecular Weight (calculated)
29889.0 Da
IEP (calculated)
8.068
GRAVY (calculated)
-0.538
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MASELPMSPH LEQIHGEIRD HFRALANGFQ RLDKIKDSSR QSKQLEELAE KMRDCKRLVK EFDRELKDGE ARNSPQVNKQ LNDEKQSMIK ELNSYVALRK
101: TYLNTLGNKK VELFDTGAGV SGEPTAEENV QMASTMSNQE LVDAGMKRMD ETDQAIERSK QVVHQTLEVG TQTASNLKGQ TDQMGRVVND LDTIQFSLKK
201: ASQLVKEIGR QVATDKCIMA FLFLIVCGVI AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYFRE
101: TYLNTLGNKK VELFDTGAGV SGEPTAEENV QMASTMSNQE LVDAGMKRMD ETDQAIERSK QVVHQTLEVG TQTASNLKGQ TDQMGRVVND LDTIQFSLKK
201: ASQLVKEIGR QVATDKCIMA FLFLIVCGVI AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYFRE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.