Factsheet for Os03t0369800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 19502382
golgi: 25047511
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029281_P007	Maize	extracellular, plasma membrane	88.36	88.36
EER92219	Sorghum	cytosol	85.82	86.45
TraesCS4B01G157900.2	Wheat	cytosol	84.73	85.35
TraesCS4D01G161700.1	Wheat	cytosol	84.36	84.98
TraesCS4A01G162300.1	Wheat	cytosol	84.36	84.98
Os07t0637400-01	Rice	plasma membrane	79.27	81.95
GSMUA_Achr2P07740_001	Banana	cytosol	74.18	75.56
GSMUA_Achr11P...	Banana	cytosol	72.36	74.81
GSMUA_Achr5P21000_001	Banana	cytosol	71.64	74.06
Solyc12g098950.1.1	Tomato	cytosol	70.18	71.48
PGSC0003DMT400011730	Potato	cytosol	70.18	71.48
AT1G48240.1	Thale cress	cytosol	68.73	71.32
AT3G17440.1	Thale cress	cytosol	69.09	70.63
CDY63023	Canola	cytosol	69.45	70.48
CDY48701	Canola	cytosol	69.45	70.48
Bra021248.1-P	Field mustard	cytosol	69.45	70.48
CDX75916	Canola	cytosol	69.45	70.48
Bra022216.1-P	Field mustard	cytosol	69.09	70.11
CDX92133	Canola	cytosol	69.09	70.11
VIT_05s0020g00750.t01	Wine grape	cytosol	68.36	69.89
Bra001663.1-P	Field mustard	cytosol	68.73	69.74
CDX82368	Canola	cytosol	68.73	69.74
CDY66384	Canola	cytosol	68.73	69.74
KRH19506	Soybean	cytosol	68.0	69.52
KRH02465	Soybean	cytosol	66.91	68.4
Os06t0715100-02	Rice	plasma membrane	60.36	63.6
CDX77329	Canola	cytosol	42.91	51.98
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	23.27	50.0
CDY41852	Canola	cytosol	25.45	45.75
CDY41849	Canola	cytosol	24.73	44.44
Bra014118.1-P	Field mustard	cytosol	24.73	44.44

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.2.4	EntrezGene:4332931	ProteinID:AAG46143.1	ProteinID:ABF96165.1	EMBL:AK064875
ProteinID:BAF12109.1	ProteinID:BAS84356.1	ncoils:Coil	ProteinID:EAZ27064.1	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0005829
GO:GO:0006623	GO:GO:0006810	GO:GO:0006888	GO:GO:0006891	GO:GO:0006896	GO:GO:0008150
GO:GO:0009987	GO:GO:0012507	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201
GO:GO:0031902	GO:GO:0042147	GO:GO:0048280	InterPro:IPR000727	EnsemblPlantsGene:Os03g0369800	EnsemblPlants:Os03t0369800-01
PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35	UniProt:Q10KU8	SUPFAM:SSF58038
InterPro:Sec20	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00000A5FCD	RefSeq:XP_015633328.1	:

Description

NOVEL PLANT SNARE 12Similar to Novel plant SNARE 13 (AtNPSN13). (Os03t0369800-01)

Coordinates

chr3:-:14514243..14518369

Molecular Weight (calculated)

30961.4 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.478

Length

275 amino acids

Sequence
(BLAST)

001: MASDVPMSPE LEQIDGEVQD IFRALQNGFQ KMDKIKDSSR QAKQLEDLTA KMKECKRLIK EFDRILKDEE SNNPPEVHKQ LNDRKQYMIK ELNSYVTLRK
101: TYQSSLGNNN KRVELFDMGA GSSEPAAEDN IQIASAMTNQ QLMDAGREQM TQTDQAIDRS KMVVAQTIET GTQTASALSQ QTEQMKRIGN ELDTVHFSLK
201: KASQLVKEIG RQVATDKCIM ALLFLIVCGV IAIIVVKIVN PHNKNIRDIP GLAPPAQNFQ ISNRRLLSVE IIRGL

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.