CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17440.1	CDX78905	AT4G19030.1	21798944
AT3G17440.1	CDX98596	AT4G19030.1	21798944
AT3G17440.1	CDX99411	AT4G19030.1	21798944
AT3G17440.1	CDY01565	AT4G19030.1	21798944
AT3G17440.1	CDX70995	AT5G22290.1	21798944
AT3G17440.1	CDX88803	AT5G22290.1	21798944
AT3G17440.1	CDX92368	AT5G22290.1	21798944
AT3G17440.1	CDY09128	AT5G22290.1	21798944
AT3G17440.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92133	Canola	cytosol	98.16	98.16
CDX82368	Canola	cytosol	92.62	92.62
AT3G17440.1	Thale cress	cytosol	91.88	92.57
CDX75916	Canola	cytosol	91.88	91.88
CDY63023	Canola	cytosol	91.51	91.51
CDY48701	Canola	cytosol	90.41	90.41
Solyc12g098950.1.1	Tomato	cytosol	80.44	80.74
KRH19506	Soybean	cytosol	79.7	80.3
PGSC0003DMT400011730	Potato	cytosol	79.34	79.63
KRH02465	Soybean	cytosol	78.97	79.55
VIT_05s0020g00750.t01	Wine grape	cytosol	78.6	79.18
GSMUA_Achr2P07740_001	Banana	cytosol	76.38	76.67
GSMUA_Achr11P...	Banana	cytosol	74.17	75.56
GSMUA_Achr5P21000_001	Banana	cytosol	73.06	74.44
Os07t0637400-01	Rice	plasma membrane	69.0	70.3
Zm00001d022275_P001	Maize	plasma membrane	68.63	70.19
EER92219	Sorghum	cytosol	70.48	69.96
TraesCS2B01G174800.1	Wheat	cytosol	69.37	69.89
TraesCS2D01G154800.1	Wheat	cytosol	69.0	69.52
TraesCS2A01G149700.1	Wheat	cytosol	69.0	69.52
EER97617	Sorghum	cytosol	69.0	69.52
Zm00001d029281_P007	Maize	extracellular, plasma membrane	70.48	69.45
Zm00001d006939_P001	Maize	cytosol	67.9	69.43
Os03t0369800-01	Rice	plasma membrane	69.74	68.73
CDX77329	Canola	cytosol	55.72	66.52
TraesCS4A01G162300.1	Wheat	cytosol	66.79	66.3
TraesCS4B01G157900.2	Wheat	cytosol	66.79	66.3
TraesCS4D01G161700.1	Wheat	cytosol	66.79	66.3
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	31.0	65.62
CDY69072	Canola	cytosol, golgi, peroxisome	61.25	63.36
CDX84617	Canola	cytosol, golgi, peroxisome	61.25	63.36
CDY59046	Canola	cytosol, golgi, peroxisome	60.89	62.98
CDX84253	Canola	cytosol, nucleus, peroxisome	60.89	62.5
CDY31671	Canola	cytosol, nucleus, peroxisome	60.89	62.5
GSMUA_Achr2P07950_001	Banana	cytosol	8.86	60.0
CDY41849	Canola	cytosol	32.1	56.86
CDY41852	Canola	cytosol	31.0	54.9
HORVU2Hr1G026870.4	Barley	plastid	53.14	52.55
GSMUA_Achr2P07960_001	Banana	cytosol	18.45	49.02
HORVU1Hr1G069840.13	Barley	extracellular	16.24	21.36

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.2.4	GO:A0A078JI68	UniProt:A0A078JI68	EnsemblPlants:CDY66384	ProteinID:CDY66384
ProteinID:CDY66384.1	ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00053510001
InterPro:IPR000727	PFAM:PF12352	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35	SMART:SM00397
SUPFAM:SSF58038	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EECAFC	:	:

Description

BnaCnng50640DBnaCnng50640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JI68]

Coordinates

chrLK035235:-:6758..9199

Molecular Weight (calculated)

30649.2 Da

IEP (calculated)

8.310

GRAVY (calculated)

-0.536

Length

271 amino acids

Sequence
(BLAST)

001: MACNIPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QTKQLEELTD KMRDCKRLVK DFDRELKDEE ASNPPQVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK IELFDMGAGP SAEPTPEDNV QVASAMSNQE LVDAGMKRMD ETDQAIQRSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMM FLFLIVCGVI AIIVVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNPEYMG R

Best Arabidopsis Sequence Match ( AT1G48240.1 )
(BLAST)

001: MASELPMSPH LEQIHGEIRD HFRALANGFQ RLDKIKDSSR QSKQLEELAE KMRDCKRLVK EFDRELKDGE ARNSPQVNKQ LNDEKQSMIK ELNSYVALRK
101: TYLNTLGNKK VELFDTGAGV SGEPTAEENV QMASTMSNQE LVDAGMKRMD ETDQAIERSK QVVHQTLEVG TQTASNLKGQ TDQMGRVVND LDTIQFSLKK
201: ASQLVKEIGR QVATDKCIMA FLFLIVCGVI AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYFRE

Arabidopsis Description

NPSN12Novel plant SNARE 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNH6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.