CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22202
CDY40392
CDY41311
CDY41590
CDY44726

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	CDY22202	AT3G09740.1	23515225
AT2G35190.1	CDY40392	AT3G09740.1	23515225
AT2G35190.1	CDY41311	AT3G09740.1	23515225
AT2G35190.1	CDY41590	AT3G09740.1	23515225
AT2G35190.1	CDY44726	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023003.1-P	Field mustard	cytosol, golgi, peroxisome	100.0	100.0
CDY69072	Canola	cytosol, golgi, peroxisome	100.0	100.0
CDY59046	Canola	cytosol, golgi, peroxisome	96.95	96.95
CDY31671	Canola	cytosol, nucleus, peroxisome	95.8	95.08
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	95.8	94.72
CDX84253	Canola	cytosol, nucleus, peroxisome	94.66	93.94
Solyc08g077550.2.1	Tomato	plastid	75.57	75.86
PGSC0003DMT400004684	Potato	cytosol	75.57	75.86
EER90393	Sorghum	cytosol	73.28	75.0
KRH04258	Soybean	cytosol	74.43	74.71
VIT_02s0012g00140.t01	Wine grape	nucleus	73.66	73.95
KRH57547	Soybean	cytosol	73.66	73.95
GSMUA_Achr11P...	Banana	cytosol	71.37	73.33
Os06t0715100-02	Rice	plasma membrane	72.52	72.8
TraesCS7A01G385500.1	Wheat	cytosol	72.14	72.41
TraesCS7D01G382100.1	Wheat	cytosol	72.14	72.41
HORVU7Hr1G091500.1	Barley	cytosol	72.14	72.41
TraesCS7B01G288400.1	Wheat	cytosol	71.76	71.76
GSMUA_Achr10P...	Banana	cytosol	72.9	70.74
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	72.9	66.09
CDY63023	Canola	cytosol	65.27	63.1
CDY48701	Canola	cytosol	65.27	63.1
CDX75916	Canola	cytosol	63.74	61.62
CDY66384	Canola	cytosol	63.36	61.25
CDX92133	Canola	cytosol	63.36	61.25
CDX82368	Canola	cytosol	63.36	61.25
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	29.77	53.06
CDX77329	Canola	cytosol	40.46	46.7
CDY41852	Canola	cytosol	27.1	46.41
CDY41849	Canola	cytosol	25.95	44.44
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	19.85	40.62

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.2	MapMan:22.7.2.4	GO:A0A078D634	UniProt:A0A078D634	EnsemblPlants:CDX84617
ProteinID:CDX84617	ProteinID:CDX84617.1	ProteinID:CDY69072.1	ncoils:Coil	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00141885001	InterPro:IPR000727	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF27
SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000253FE22	SEG:seg

Description

BnaA03g16130DBnaA03g16130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078D634]

Coordinates

chrLK031838:-:393411..395811

Molecular Weight (calculated)

29589.6 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.458

Length

262 amino acids

Sequence
(BLAST)

001: MDVSAVSEEL AELEGQINDI FRALSNGFQK LEKIKDANRQ SRQLEELTDK MRDCKSLIKD FDREVKSLES GNDANTNRML NDRRQSMVKE LNSYVALKKK
101: YSSNLASNNK RVDLFDGPAE DHMEENVLLA SNMSNQELMN KGNSMMDDTD QAIERGKKIV LETINVGTDT SAALKAQTDQ MSRVVNELDS IHFSLKKASK
201: LVKEIGRQVA TDKCIMAFLF LIVIGVIAII IVKIVNPNNK DIRDIPGLAP PAMNRRLLWN HY

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.