CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17440.1	CDX78905	AT4G19030.1	21798944
AT3G17440.1	CDX98596	AT4G19030.1	21798944
AT3G17440.1	CDX99411	AT4G19030.1	21798944
AT3G17440.1	CDY01565	AT4G19030.1	21798944
AT3G17440.1	CDX70995	AT5G22290.1	21798944
AT3G17440.1	CDX88803	AT5G22290.1	21798944
AT3G17440.1	CDX92368	AT5G22290.1	21798944
AT3G17440.1	CDY09128	AT5G22290.1	21798944
AT3G17440.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63023	Canola	cytosol	98.16	98.16
AT3G17440.1	Thale cress	cytosol	91.88	92.57
CDX75916	Canola	cytosol	90.77	90.77
CDX92133	Canola	cytosol	90.77	90.77
CDY66384	Canola	cytosol	90.41	90.41
CDX82368	Canola	cytosol	90.04	90.04
KRH19506	Soybean	cytosol	81.92	82.53
Solyc12g098950.1.1	Tomato	cytosol	81.92	82.22
KRH02465	Soybean	cytosol	81.18	81.78
PGSC0003DMT400011730	Potato	cytosol	80.81	81.11
VIT_05s0020g00750.t01	Wine grape	cytosol	78.6	79.18
GSMUA_Achr11P...	Banana	cytosol	76.01	77.44
GSMUA_Achr2P07740_001	Banana	cytosol	76.75	77.04
GSMUA_Achr5P21000_001	Banana	cytosol	75.28	76.69
EER97617	Sorghum	cytosol	70.85	71.38
Os07t0637400-01	Rice	plasma membrane	69.37	70.68
TraesCS2B01G174800.1	Wheat	cytosol	70.11	70.63
Zm00001d022275_P001	Maize	plasma membrane	69.0	70.57
TraesCS2D01G154800.1	Wheat	cytosol	69.74	70.26
Zm00001d006939_P001	Maize	cytosol	68.63	70.19
Zm00001d029281_P007	Maize	extracellular, plasma membrane	71.22	70.18
EER92219	Sorghum	cytosol	70.48	69.96
TraesCS2A01G149700.1	Wheat	cytosol	69.37	69.89
Os03t0369800-01	Rice	plasma membrane	70.48	69.45
CDX77329	Canola	cytosol	56.46	67.4
TraesCS4A01G162300.1	Wheat	cytosol	67.16	66.67
TraesCS4B01G157900.2	Wheat	cytosol	67.16	66.67
TraesCS4D01G161700.1	Wheat	cytosol	67.16	66.67
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	31.0	65.62
CDY69072	Canola	cytosol, golgi, peroxisome	63.1	65.27
CDX84617	Canola	cytosol, golgi, peroxisome	63.1	65.27
CDY59046	Canola	cytosol, golgi, peroxisome	62.73	64.89
CDY31671	Canola	cytosol, nucleus, peroxisome	63.1	64.77
CDX84253	Canola	cytosol, nucleus, peroxisome	63.1	64.77
GSMUA_Achr2P07950_001	Banana	cytosol	9.23	62.5
CDY41849	Canola	cytosol	31.73	56.21
CDY41852	Canola	cytosol	31.37	55.56
HORVU2Hr1G026870.4	Barley	plastid	54.61	54.01
GSMUA_Achr2P07960_001	Banana	cytosol	19.19	50.98
HORVU1Hr1G069840.13	Barley	extracellular	17.34	22.82

Protein Annotations

EnsemblPlants:CDY48701	EnsemblPlantsGene:GSBRNA2T00091587001	Gene3D:1.20.5.110	GO:A0A078IFA5	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35
PFAM:PF12352	PFscan:PS50192	ProteinID:CDY48701	ProteinID:CDY48701.1	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI0004EE3D0B	UniProt:A0A078IFA5	MapMan:22.7.2.4	:	:

Description

BnaCnng16780DBnaCnng16780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFA5]

Coordinates

chrLK032787:-:62253..64687

Molecular Weight (calculated)

30627.0 Da

IEP (calculated)

8.064

GRAVY (calculated)

-0.541

Length

271 amino acids

Sequence
(BLAST)

001: MGSNLPMSPE LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRDCKRLIK DFDRELKDEE TRNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGA SGEPTAEENV QVASAMSNQE LVDAGMKRVD ETDQAIERSK QVVEQTIQVG TQTAANLKGQ TDQMGRVVNH LDTIQFSLKK
201: ASQLVKEIGR QVATDKCIMM FLFLIVCGVV AIIVVKIVHP NNKDIRDIPG LAPPAPARKL LYLRNPEYLQ R

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.