CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
peroxisome 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22202
CDY40392
CDY41311
CDY41590
CDY44726

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	CDY22202	AT3G09740.1	23515225
AT2G35190.1	CDY40392	AT3G09740.1	23515225
AT2G35190.1	CDY41311	AT3G09740.1	23515225
AT2G35190.1	CDY41590	AT3G09740.1	23515225
AT2G35190.1	CDY44726	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	100.0	100.0
CDX84253	Canola	cytosol, nucleus, peroxisome	96.97	96.97
CDY69072	Canola	cytosol, golgi, peroxisome	95.08	95.8
CDX84617	Canola	cytosol, golgi, peroxisome	95.08	95.8
CDY59046	Canola	cytosol, golgi, peroxisome	93.94	94.66
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	94.7	94.34
Solyc08g077550.2.1	Tomato	plastid	74.62	75.48
PGSC0003DMT400004684	Potato	cytosol	74.62	75.48
KRH04258	Soybean	cytosol	74.24	75.1
KRH57547	Soybean	cytosol	73.86	74.71
VIT_02s0012g00140.t01	Wine grape	nucleus	73.11	73.95
EER90393	Sorghum	cytosol	71.21	73.44
Os06t0715100-02	Rice	plasma membrane	70.83	71.65
GSMUA_Achr11P...	Banana	cytosol	68.94	71.37
TraesCS7D01G382100.1	Wheat	cytosol	70.45	71.26
TraesCS7A01G385500.1	Wheat	cytosol	70.45	71.26
HORVU7Hr1G091500.1	Barley	cytosol	70.45	71.26
TraesCS7B01G288400.1	Wheat	cytosol	70.08	70.61
GSMUA_Achr10P...	Banana	cytosol	70.45	68.89
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	70.83	64.71
CDY63023	Canola	cytosol	64.77	63.1
CDY48701	Canola	cytosol	64.77	63.1
CDX75916	Canola	cytosol	63.26	61.62
CDX92133	Canola	cytosol	62.88	61.25
CDX82368	Canola	cytosol	62.88	61.25
CDY66384	Canola	cytosol	62.5	60.89
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	29.17	52.38
CDX77329	Canola	cytosol	40.53	47.14
CDY41852	Canola	cytosol	26.14	45.1
CDY41849	Canola	cytosol	25.76	44.44
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	20.83	42.97

Protein Annotations

EnsemblPlants:CDY31671	EnsemblPlantsGene:GSBRNA2T00050281001	Gene3D:1.20.5.110	GO:A0A078H1L4	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF27
PFscan:PS50192	ProteinID:CDY31671	ProteinID:CDY31671.1	SEG:seg	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI0002547E5C	UniProt:A0A078H1L4	MapMan:13.4.2.3.2	MapMan:22.7.2.4	:

Description

BnaA05g08760DBnaA05g08760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1L4]

Coordinates

chrLK032277:+:238084..239908

Molecular Weight (calculated)

29595.6 Da

IEP (calculated)

6.554

GRAVY (calculated)

-0.472

Length

264 amino acids

Sequence
(BLAST)

001: MDSISAVSEE LAEIEGQIND LFRALSNGFQ KLEKIKDANR QSRQLQELTD KMRDCKSLIK DFDSEVKSLE GGGNDANTNR MLNDRRQSMV KELNSYVALK
101: KKYSSNLASN NKRVDLFDGP AEDNMEENVL LASNMSNQEL MNKGNSMMDD TDQAIERGKK IVQETINVGT DTSAALKAQT DQMSRVVNEL DSIHFSLKKA
201: SKLVKEIGRQ VATDKCIMAF LCLIVIGVIA IIIVKIVNPN NKDIRDIPGL APPAMNRRLL WNHY

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.