Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400093449 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35190.1 | PGSC0003DMT400093449 | AT3G09740.1 | 23515225 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g077550.2.1 | Tomato | plastid | 99.23 | 99.23 |
| VIT_02s0012g00140.t01 | Wine grape | nucleus | 81.99 | 81.99 |
| GSMUA_Achr11P... | Banana | cytosol | 78.16 | 80.0 |
| KRH04258 | Soybean | cytosol | 79.69 | 79.69 |
| KRH57547 | Soybean | cytosol | 78.54 | 78.54 |
| EER90393 | Sorghum | cytosol | 75.86 | 77.34 |
| AT2G35190.1 | Thale cress | cytosol, nucleus, peroxisome | 77.39 | 76.23 |
| Bra023003.1-P | Field mustard | cytosol, golgi, peroxisome | 75.86 | 75.57 |
| CDX84617 | Canola | cytosol, golgi, peroxisome | 75.86 | 75.57 |
| CDY69072 | Canola | cytosol, golgi, peroxisome | 75.86 | 75.57 |
| Os06t0715100-02 | Rice | plasma membrane | 75.1 | 75.1 |
| Bra005361.1-P | Field mustard | cytosol, nucleus, peroxisome | 75.48 | 74.62 |
| CDY31671 | Canola | cytosol, nucleus, peroxisome | 75.48 | 74.62 |
| Bra017331.1-P | Field mustard | cytosol | 74.71 | 74.43 |
| CDY59046 | Canola | cytosol, golgi, peroxisome | 74.33 | 74.05 |
| CDX84253 | Canola | cytosol, nucleus, peroxisome | 74.71 | 73.86 |
| GSMUA_Achr10P... | Banana | cytosol | 76.25 | 73.7 |
| HORVU7Hr1G091500.1 | Barley | cytosol | 73.18 | 73.18 |
| TraesCS7D01G382100.1 | Wheat | cytosol | 73.18 | 73.18 |
| TraesCS7A01G385500.1 | Wheat | cytosol | 72.8 | 72.8 |
| TraesCS7B01G288400.1 | Wheat | cytosol | 72.8 | 72.52 |
| Zm00001d036406_P001 | Maize | mitochondrion, plasma membrane | 75.48 | 68.17 |
| PGSC0003DMT400011730 | Potato | cytosol | 68.2 | 65.93 |
| HORVU2Hr1G084560.1 | Barley | extracellular, plasma membrane | 30.65 | 54.42 |
Protein Annotations
| Gene3D:1.20.5.110 | EntrezGene:102585527 | MapMan:13.4.2.3.2 | MapMan:22.7.2.4 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0009504 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR000727 | UniProt:M0ZNT6 | PFAM:PF03908 | EnsemblPlantsGene:PGSC0003DMG400001854 | PGSC:PGSC0003DMG400001854 |
| EnsemblPlants:PGSC0003DMT400004684 | PFscan:PS50192 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF27 | SMART:SM00397 | SUPFAM:SSF58038 |
| InterPro:Sec20 | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000294DDDA | RefSeq:XP_006358624.1 | SEG:seg |
Description
Novel plant snare [Source:PGSC_GENE;Acc:PGSC0003DMG400001854]
Coordinates
chr8:+:50612376..50620891
Molecular Weight (calculated)
29444.7 Da
IEP (calculated)
6.320
GRAVY (calculated)
-0.417
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLSGLSEE LGEIEGQILD IFRALSNGFQ KLEKIKDSNR QSRQLEELTG KMRECKRLIK EFDREVKDLE YKSDAETTKM LSEKKQSMIK ELNSYVALKK
101: QYASNIENKR VDLFEGPGEG FAEENGLLAS NMSNQQLMDQ GNRMMDETDE AIERSKKVVH ETVNVGTETA AALKAQTEQM SRIVNELDSI HFSIKKATQL
201: VKELGRQVAT DRCIMALLFL IVIGVIAIII VKIVNPHNKD IRDIPGLAPP APSRRLLAYP Y
101: QYASNIENKR VDLFEGPGEG FAEENGLLAS NMSNQQLMDQ GNRMMDETDE AIERSKKVVH ETVNVGTETA AALKAQTEQM SRIVNELDSI HFSIKKATQL
201: VKELGRQVAT DRCIMALLFL IVIGVIAIII VKIVNPHNKD IRDIPGLAPP APSRRLLAYP Y
001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
Arabidopsis Description
NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.