Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023003.1-P | Field mustard | cytosol, golgi, peroxisome | 94.72 | 95.8 |
| CDX84617 | Canola | cytosol, golgi, peroxisome | 94.72 | 95.8 |
| CDY69072 | Canola | cytosol, golgi, peroxisome | 94.72 | 95.8 |
| Bra005361.1-P | Field mustard | cytosol, nucleus, peroxisome | 94.34 | 94.7 |
| CDX84253 | Canola | cytosol, nucleus, peroxisome | 94.34 | 94.7 |
| CDY31671 | Canola | cytosol, nucleus, peroxisome | 94.34 | 94.7 |
| Bra017331.1-P | Field mustard | cytosol | 93.21 | 94.27 |
| CDY59046 | Canola | cytosol, golgi, peroxisome | 92.83 | 93.89 |
| Solyc08g077550.2.1 | Tomato | plastid | 76.23 | 77.39 |
| PGSC0003DMT400004684 | Potato | cytosol | 76.23 | 77.39 |
| KRH04258 | Soybean | cytosol | 75.47 | 76.63 |
| KRH57547 | Soybean | cytosol | 74.72 | 75.86 |
| EER90393 | Sorghum | cytosol | 73.21 | 75.78 |
| VIT_02s0012g00140.t01 | Wine grape | nucleus | 73.58 | 74.71 |
| GSMUA_Achr11P... | Banana | cytosol | 70.94 | 73.73 |
| Os06t0715100-02 | Rice | plasma membrane | 72.45 | 73.56 |
| TraesCS7D01G382100.1 | Wheat | cytosol | 71.32 | 72.41 |
| HORVU7Hr1G091500.1 | Barley | cytosol | 71.32 | 72.41 |
| TraesCS7A01G385500.1 | Wheat | cytosol | 71.32 | 72.41 |
| TraesCS7B01G288400.1 | Wheat | cytosol | 70.94 | 71.76 |
| GSMUA_Achr10P... | Banana | cytosol | 72.08 | 70.74 |
| Zm00001d036406_P001 | Maize | mitochondrion, plasma membrane | 73.21 | 67.13 |
| AT1G48240.1 | Thale cress | cytosol | 64.91 | 64.91 |
| AT3G17440.1 | Thale cress | cytosol | 64.91 | 63.94 |
| HORVU2Hr1G084560.1 | Barley | extracellular, plasma membrane | 29.43 | 53.06 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.2 | MapMan:22.7.2.4 | EntrezGene:818086 | UniProt:A0A178VVE6 | ProteinID:AAC61818.2 |
| ProteinID:AEC09077.1 | EMBL:AF439822 | ArrayExpress:AT2G35190 | EnsemblPlantsGene:AT2G35190 | RefSeq:AT2G35190 | TAIR:AT2G35190 |
| RefSeq:AT2G35190-TAIR-G | EnsemblPlants:AT2G35190.1 | TAIR:AT2G35190.1 | EMBL:AY143839 | Unigene:At.12726 | ncoils:Coil |
| GO:GO:0000149 | GO:GO:0000911 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006623 | GO:GO:0006810 |
| GO:GO:0006888 | GO:GO:0006891 | GO:GO:0006896 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009504 |
| GO:GO:0009987 | GO:GO:0012507 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0031201 | GO:GO:0031902 | GO:GO:0042147 | GO:GO:0048280 | GO:GO:0051301 | InterPro:IPR000727 |
| Symbol:NPSN11 | RefSeq:NP_565800.1 | ProteinID:OAP09786.1 | PFAM:PF03908 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50192 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF27 | UniProt:Q944A9 | SMART:SM00397 | SUPFAM:SSF58038 |
| InterPro:Sec20 | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00001623C2 | SEG:seg | : |
Description
NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
Coordinates
chr2:+:14830626..14833417
Molecular Weight (calculated)
29874.0 Da
IEP (calculated)
6.313
GRAVY (calculated)
-0.465
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.