CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, peroxisome
Any Predictor:	cytosol, golgi, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22202
CDY40392
CDY41311
CDY41590
CDY44726

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	CDY22202	AT3G09740.1	23515225
AT2G35190.1	CDY40392	AT3G09740.1	23515225
AT2G35190.1	CDY41311	AT3G09740.1	23515225
AT2G35190.1	CDY41590	AT3G09740.1	23515225
AT2G35190.1	CDY44726	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017331.1-P	Field mustard	cytosol	99.62	99.62
CDY69072	Canola	cytosol, golgi, peroxisome	96.95	96.95
CDX84617	Canola	cytosol, golgi, peroxisome	96.95	96.95
CDY31671	Canola	cytosol, nucleus, peroxisome	94.66	93.94
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	93.89	92.83
CDX84253	Canola	cytosol, nucleus, peroxisome	93.51	92.8
EER90393	Sorghum	cytosol	72.9	74.61
PGSC0003DMT400004684	Potato	cytosol	74.05	74.33
Solyc08g077550.2.1	Tomato	plastid	74.05	74.33
VIT_02s0012g00140.t01	Wine grape	nucleus	73.66	73.95
KRH04258	Soybean	cytosol	73.66	73.95
KRH57547	Soybean	cytosol	73.28	73.56
GSMUA_Achr11P...	Banana	cytosol	70.61	72.55
Os06t0715100-02	Rice	plasma membrane	72.14	72.41
TraesCS7B01G288400.1	Wheat	cytosol	70.99	70.99
TraesCS7A01G385500.1	Wheat	cytosol	70.61	70.88
TraesCS7D01G382100.1	Wheat	cytosol	70.61	70.88
HORVU7Hr1G091500.1	Barley	cytosol	70.61	70.88
GSMUA_Achr10P...	Banana	cytosol	72.14	70.0
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	72.14	65.4
CDY63023	Canola	cytosol	64.89	62.73
CDY48701	Canola	cytosol	64.89	62.73
CDX75916	Canola	cytosol	63.74	61.62
CDX82368	Canola	cytosol	63.36	61.25
CDY66384	Canola	cytosol	62.98	60.89
CDX92133	Canola	cytosol	62.98	60.89
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	29.01	51.7
CDY41852	Canola	cytosol	27.1	46.41
CDX77329	Canola	cytosol	40.08	46.26
CDY41849	Canola	cytosol	25.95	44.44
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	19.85	40.62

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.2	MapMan:22.7.2.4	GO:A0A078J6X4	UniProt:A0A078J6X4	EnsemblPlants:CDY59046
ProteinID:CDY59046	ProteinID:CDY59046.1	ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00025483001	InterPro:IPR000727	PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF27
SMART:SM00397	SUPFAM:SSF58038	InterPro:Sec20	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EECE6C
SEG:seg	:	:	:	:	:

Description

BnaAnng15710DBnaAnng15710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6X4]

Coordinates

chrLK033720:-:44886..47241

Molecular Weight (calculated)

29517.5 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.440

Length

262 amino acids

Sequence
(BLAST)

001: MDLSAVSEEL AELEGQINDL FRALSNGFQK LEKIKDASRQ SRQLEELTDK MRDCKSLIKD FDREVKSLEG GNDASTNRML NDRRQSMVKE LNSYVALKKK
101: YSSNLASNNK RVDLFDGPAE DHMEENVLLA SNMTNQELVN KGNSMMDDTD QAIERGKKIV LETINVGTDT SAALKAQTDQ MSRVVNELDS IHFSLKKSSK
201: LVKEIGRQVA TDKCIMAFLF LIVIGVIAII IVKIVNPNNK DIRDIPGLAP PAMNRRLLWN HY

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.