Factsheet for VIT_02s0012g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0040g02130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	VIT_08s0040g02130.t01	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077550.2.1	Tomato	plastid	81.99	81.99
PGSC0003DMT400004684	Potato	cytosol	81.99	81.99
GSMUA_Achr11P...	Banana	cytosol	80.08	81.96
KRH04258	Soybean	cytosol	79.31	79.31
KRH57547	Soybean	cytosol	78.93	78.93
EER90393	Sorghum	cytosol	73.95	75.39
Bra017331.1-P	Field mustard	cytosol	74.33	74.05
Os06t0715100-02	Rice	plasma membrane	73.95	73.95
Bra023003.1-P	Field mustard	cytosol, golgi, peroxisome	73.95	73.66
CDX84617	Canola	cytosol, golgi, peroxisome	73.95	73.66
CDY59046	Canola	cytosol, golgi, peroxisome	73.95	73.66
CDY69072	Canola	cytosol, golgi, peroxisome	73.95	73.66
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	74.71	73.58
GSMUA_Achr10P...	Banana	cytosol	75.86	73.33
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	73.95	73.11
CDY31671	Canola	cytosol, nucleus, peroxisome	73.95	73.11
TraesCS7B01G288400.1	Wheat	cytosol	72.8	72.52
TraesCS7A01G385500.1	Wheat	cytosol	72.41	72.41
TraesCS7D01G382100.1	Wheat	cytosol	72.41	72.41
HORVU7Hr1G091500.1	Barley	cytosol	72.03	72.03
CDX84253	Canola	cytosol, nucleus, peroxisome	72.8	71.97
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	74.33	67.13
VIT_05s0020g00750.t01	Wine grape	cytosol	65.13	63.2
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	28.74	51.02

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100259220	wikigene:100259220	MapMan:13.4.2.3.2	MapMan:22.7.2.4	EMBL:AM478729
ProteinID:CAN77481	ProteinID:CAN77481.1	ProteinID:CBI33980	ProteinID:CBI33980.3	ncoils:Coil	UniProt:D7TTK0
EMBL:FN596247	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005783
GO:GO:0005789	GO:GO:0005794	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006888
GO:GO:0006891	GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0012507	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280
InterPro:IPR000727	EntrezGene:LOC100259220	wikigene:LOC100259220	PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230
PANTHER:PTHR21230:SF27	SMART:SM00397	SUPFAM:SSF58038	InterPro:Sec20	TIGR:TC61886	TIGR:TC64465
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00015C83FD	ArrayExpress:VIT_02s0012g00140	EnsemblPlantsGene:VIT_02s0012g00140	EnsemblPlants:VIT_02s0012g00140.t01
unigene:Vvi.8348	RefSeq:XP_002282944	RefSeq:XP_002282944.1	RefSeq:XP_010664205.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:5757676..5775802

Molecular Weight (calculated)

29512.7 Da

IEP (calculated)

5.962

GRAVY (calculated)

-0.416

Length

261 amino acids

Sequence
(BLAST)

001: MSSLAGISEE LAEIDGQISD IFRALSNGFQ KLEKIKDTSR QSRQLEELTG KMRECKRLIK EFDREVKDLE IRNDPETNKM LNEKKQSMIK ELNSYVALKK
101: QYATNLENKR IDLFDAPADD VGEENVLLAS SMTNQQLMDN GNRMMDETDQ VIERSKKVVQ DTVNVGTETA AALKSQTEQM SRIVNELDSI HFSIKKASQL
201: VKEIGRQVAT DRCIMALLFI LVIGVIAVII VKLVNPNNKD IRDVPGLAPP ALTRKLLWHP N

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.