Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0553700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35190.1 | Os05t0553700-01 | AT3G09740.1 | 23515225 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90393 | Sorghum | cytosol | 90.42 | 92.19 |
| HORVU7Hr1G091500.1 | Barley | cytosol | 86.21 | 86.21 |
| TraesCS7B01G288400.1 | Wheat | cytosol | 86.21 | 85.88 |
| TraesCS7D01G382100.1 | Wheat | cytosol | 85.82 | 85.82 |
| TraesCS7A01G385500.1 | Wheat | cytosol | 85.44 | 85.44 |
| Zm00001d036406_P001 | Maize | mitochondrion, plasma membrane | 89.27 | 80.62 |
| PGSC0003DMT400004684 | Potato | cytosol | 75.1 | 75.1 |
| GSMUA_Achr11P... | Banana | cytosol | 73.18 | 74.9 |
| Solyc08g077550.2.1 | Tomato | plastid | 74.71 | 74.71 |
| VIT_02s0012g00140.t01 | Wine grape | nucleus | 73.95 | 73.95 |
| CDY69072 | Canola | cytosol, golgi, peroxisome | 72.8 | 72.52 |
| CDX84617 | Canola | cytosol, golgi, peroxisome | 72.8 | 72.52 |
| Bra023003.1-P | Field mustard | cytosol, golgi, peroxisome | 72.8 | 72.52 |
| Bra017331.1-P | Field mustard | cytosol | 72.8 | 72.52 |
| AT2G35190.1 | Thale cress | cytosol, nucleus, peroxisome | 73.56 | 72.45 |
| CDY59046 | Canola | cytosol, golgi, peroxisome | 72.41 | 72.14 |
| CDX84253 | Canola | cytosol, nucleus, peroxisome | 72.03 | 71.21 |
| Bra005361.1-P | Field mustard | cytosol, nucleus, peroxisome | 71.65 | 70.83 |
| CDY31671 | Canola | cytosol, nucleus, peroxisome | 71.65 | 70.83 |
| GSMUA_Achr10P... | Banana | cytosol | 73.18 | 70.74 |
| KRH04258 | Soybean | cytosol | 69.73 | 69.73 |
| KRH57547 | Soybean | cytosol | 68.97 | 68.97 |
| Os07t0637400-01 | Rice | plasma membrane | 64.37 | 63.16 |
| Os03t0369800-01 | Rice | plasma membrane | 63.6 | 60.36 |
| HORVU2Hr1G084560.1 | Barley | extracellular, plasma membrane | 31.03 | 55.1 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.2 | MapMan:22.7.2.4 | EntrezGene:9267986 | EMBL:AK058743 | EMBL:AY740014 |
| ProteinID:BAD53572.1 | ProteinID:BAS99492.1 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005886 |
| GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006888 | GO:GO:0006891 | GO:GO:0006896 | GO:GO:0008150 |
| GO:GO:0009504 | GO:GO:0009987 | GO:GO:0012507 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0031201 | GO:GO:0031902 | GO:GO:0042147 | GO:GO:0048280 | InterPro:IPR000727 | EnsemblPlantsGene:Os06g0715100 |
| EnsemblPlants:Os06t0715100-02 | PFAM:PF03908 | PFscan:PS50192 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF27 | UniProt:Q5Z9Q1 |
| SMART:SM00397 | SUPFAM:SSF58038 | InterPro:Sec20 | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0000446DBB |
| RefSeq:XP_015642684.1 | SEG:seg | : | : | : | : |
Description
NOVEL PLANT SNARE 11Similar to Novel plant SNARE 11 (AtNPSN11). (Os06t0715100-01);Similar to Novel plant SNARE 11. (Os06t0715100-02)
Coordinates
chr6:-:30357731..30361171
Molecular Weight (calculated)
29313.4 Da
IEP (calculated)
5.264
GRAVY (calculated)
-0.377
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLESVNPEL AEIDGQIGDI LRALQNGFQK LDKIKDANRR SRQLEELTDK MRDCKRLIKD FERVVKDMAG STDPETARML HDRKQSMIKE LNSYVALKKQ
101: YASENKRVDL FDGPSVEDGF GEENVLLASN MTNQQLMDQG NQLMDETDQA IARSKQTVQE TINVGTETAA ALKSQTEQMS RIVNELDSIH FSIKKASQMV
201: KEIGRQVATD RCIMALLFLI VAGVIAIIVV KIVNPQNKTI RDIPGLAPPV SRRLLSIVED I
101: YASENKRVDL FDGPSVEDGF GEENVLLASN MTNQQLMDQG NQLMDETDQA IARSKQTVQE TINVGTETAA ALKSQTEQMS RIVNELDSIH FSIKKASQMV
201: KEIGRQVATD RCIMALLFLI VAGVIAIIVV KIVNPQNKTI RDIPGLAPPV SRRLLSIVED I
001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
Arabidopsis Description
NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.