Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G084160.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35190.1 | HORVU1Hr1G084160.1 | AT3G09740.1 | 23515225 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G091500.1 | Barley | cytosol | 61.22 | 34.48 |
| EER90393 | Sorghum | cytosol | 57.14 | 32.81 |
| Os06t0715100-02 | Rice | plasma membrane | 55.1 | 31.03 |
| Solyc08g077550.2.1 | Tomato | plastid | 54.42 | 30.65 |
| PGSC0003DMT400004684 | Potato | cytosol | 54.42 | 30.65 |
| KRH57547 | Soybean | cytosol | 53.74 | 30.27 |
| KRH04258 | Soybean | cytosol | 53.74 | 30.27 |
| Bra023003.1-P | Field mustard | cytosol, golgi, peroxisome | 53.06 | 29.77 |
| CDX84617 | Canola | cytosol, golgi, peroxisome | 53.06 | 29.77 |
| CDY69072 | Canola | cytosol, golgi, peroxisome | 53.06 | 29.77 |
| AT2G35190.1 | Thale cress | cytosol, nucleus, peroxisome | 53.06 | 29.43 |
| Bra017331.1-P | Field mustard | cytosol | 52.38 | 29.39 |
| Bra005361.1-P | Field mustard | cytosol, nucleus, peroxisome | 52.38 | 29.17 |
| CDX84253 | Canola | cytosol, nucleus, peroxisome | 52.38 | 29.17 |
| CDY31671 | Canola | cytosol, nucleus, peroxisome | 52.38 | 29.17 |
| Zm00001d036406_P001 | Maize | mitochondrion, plasma membrane | 57.14 | 29.07 |
| CDY59046 | Canola | cytosol, golgi, peroxisome | 51.7 | 29.01 |
| VIT_02s0012g00140.t01 | Wine grape | nucleus | 51.02 | 28.74 |
| GSMUA_Achr11P... | Banana | cytosol | 48.98 | 28.24 |
| GSMUA_Achr10P... | Banana | cytosol | 49.66 | 27.04 |
| HORVU2Hr1G026870.4 | Barley | plastid | 24.49 | 13.14 |
| HORVU1Hr1G069840.13 | Barley | extracellular | 5.44 | 3.88 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G084560.1 | EnsemblPlantsGene:HORVU2Hr1G084560 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR21230 |
| PANTHER:PTHR21230:SF27 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B47509C | UniProt:A0A287IQA7 | MapMan:22.7.2.4 |
Description
No Description!
Coordinates
chrchr2H:+:611959466..611960734
Molecular Weight (calculated)
16691.4 Da
IEP (calculated)
8.841
GRAVY (calculated)
-0.103
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: RLSDAQWLHM MSLVYIIPVR FESSTEIERL TCPYSPHPNA RSLSSFVDCP RDDQRGYRNC SCSQSTEQMS RVVNELDSIH FSMKKASNLV KEIGRQVATH
101: RCIMALLFLI VARVIAVIIV KIVNPHNKDI PDIPGLAPPV SRRYCPP
101: RCIMALLFLI VARVIAVIIV KIVNPHNKDI PDIPGLAPPV SRRYCPP
001: MRDCKRLVKE FDRELKDGEA RNSPQVNKQL NDEKQSMIKE LNSYVALRKT YLNTLGNKKV ELFDTGAGVS GEPTAEENVQ MASTMSNQEL VDAGMKRMDE
101: TDQAIERSKQ VVHQTLEVGT QTASNLKGQT DQMGRVVNDL DTIQFSLKKA SQLVKEIGRQ VATDKCIMAF LFLIVCGVIA IIIVKIVNPN NKDIRDIPGL
201: APPAQSRKLL YFRE
101: TDQAIERSKQ VVHQTLEVGT QTASNLKGQT DQMGRVVNDL DTIQFSLKKA SQLVKEIGRQ VATDKCIMAF LFLIVCGVIA IIIVKIVNPN NKDIRDIPGL
201: APPAQSRKLL YFRE
Arabidopsis Description
NPSN12Novel plant SNARE 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNH6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.