CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22202
CDY40392
CDY41311
CDY41590
CDY44726

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	CDY22202	AT3G09740.1	23515225
AT2G35190.1	CDY40392	AT3G09740.1	23515225
AT2G35190.1	CDY41311	AT3G09740.1	23515225
AT2G35190.1	CDY41590	AT3G09740.1	23515225
AT2G35190.1	CDY44726	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31671	Canola	cytosol, nucleus, peroxisome	96.97	96.97
CDY69072	Canola	cytosol, golgi, peroxisome	93.94	94.66
CDX84617	Canola	cytosol, golgi, peroxisome	93.94	94.66
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	94.7	94.34
CDY59046	Canola	cytosol, golgi, peroxisome	92.8	93.51
KRH04258	Soybean	cytosol	74.24	75.1
PGSC0003DMT400004684	Potato	cytosol	73.86	74.71
KRH57547	Soybean	cytosol	73.86	74.71
Solyc08g077550.2.1	Tomato	plastid	73.86	74.71
EER90393	Sorghum	cytosol	71.59	73.83
VIT_02s0012g00140.t01	Wine grape	nucleus	71.97	72.8
Os06t0715100-02	Rice	plasma membrane	71.21	72.03
TraesCS7A01G385500.1	Wheat	cytosol	70.83	71.65
TraesCS7D01G382100.1	Wheat	cytosol	70.83	71.65
HORVU7Hr1G091500.1	Barley	cytosol	70.83	71.65
GSMUA_Achr11P...	Banana	cytosol	68.94	71.37
TraesCS7B01G288400.1	Wheat	cytosol	70.45	70.99
GSMUA_Achr10P...	Banana	cytosol	70.83	69.26
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	71.21	65.05
CDY63023	Canola	cytosol	64.77	63.1
CDY48701	Canola	cytosol	64.77	63.1
CDX75916	Canola	cytosol	63.26	61.62
CDX82368	Canola	cytosol	62.88	61.25
CDY66384	Canola	cytosol	62.5	60.89
CDX92133	Canola	cytosol	62.5	60.89
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	29.17	52.38
CDX77329	Canola	cytosol	40.53	47.14
CDY41852	Canola	cytosol	26.14	45.1
CDY41849	Canola	cytosol	26.14	45.1
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	20.45	42.19

Protein Annotations

EnsemblPlants:CDX84253	EnsemblPlantsGene:GSBRNA2T00141331001	Gene3D:1.20.5.110	GO:A0A078DA97	InterPro:IPR000727	InterPro:T_SNARE_dom
ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF27	PFscan:PS50192	ProteinID:CDX84253	ProteinID:CDX84253.1
SEG:seg	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0004EDC3C0	MapMan:13.4.2.3.2
MapMan:22.7.2.4	:	:	:	:	:

Description

BnaC04g10150D

Coordinates

chrLK031836:-:1183592..1185828

Molecular Weight (calculated)

29621.6 Da

IEP (calculated)

5.944

GRAVY (calculated)

-0.467

Length

264 amino acids

Sequence
(BLAST)

001: MDPISAVSEE LAEIEGQIND LFRALSNGFQ KLEKIKDANR QSRQLEDLTD KMRDCKSLIK DFDREVKSLE GGGNDANTNR MLNDRRQSMV KELNSYVALK
101: KKYSSSLASN NKRVDLFDGP AEENMEENVL LASNMSNQEL MNIGNSMMDD TDQAIERGKK IVQETINVGT DTSAALKAQT DQMSRVVNEL DSIHFSLKKA
201: SKLVKEIGRQ VATDKCIMAF LCLIVIGVTA IIIVKIVNPN NKDIRDIPGL APPAMNRRLL WNHY

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.