Factsheet for TraesCS7D01G382100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G379800.1
TraesCS1B01G401800.1
TraesCS1D01G190400.1
TraesCS1D01G387200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	TraesCS1A01G379800.1	AT3G09740.1	23515225
AT2G35190.1	TraesCS1B01G401800.1	AT3G09740.1	23515225
AT2G35190.1	TraesCS1D01G190400.1	AT3G09740.1	23515225
AT2G35190.1	TraesCS1D01G387200.1	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G385500.1	Wheat	cytosol	98.47	98.47
TraesCS7B01G288400.1	Wheat	cytosol	98.47	98.09
HORVU7Hr1G091500.1	Barley	cytosol	97.7	97.7
EER90393	Sorghum	cytosol	85.44	87.11
Os06t0715100-02	Rice	plasma membrane	85.82	85.82
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	84.67	76.47
GSMUA_Achr11P...	Banana	cytosol	73.18	74.9
Solyc08g077550.2.1	Tomato	plastid	73.18	73.18
PGSC0003DMT400004684	Potato	cytosol	73.18	73.18
VIT_02s0012g00140.t01	Wine grape	nucleus	72.41	72.41
CDY69072	Canola	cytosol, golgi, peroxisome	72.41	72.14
CDX84617	Canola	cytosol, golgi, peroxisome	72.41	72.14
Bra023003.1-P	Field mustard	cytosol, golgi, peroxisome	72.41	72.14
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	72.41	71.32
Bra017331.1-P	Field mustard	cytosol	71.26	70.99
CDX84253	Canola	cytosol, nucleus, peroxisome	71.65	70.83
GSMUA_Achr10P...	Banana	cytosol	73.18	70.74
CDY59046	Canola	cytosol, golgi, peroxisome	70.88	70.61
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	71.26	70.45
CDY31671	Canola	cytosol, nucleus, peroxisome	71.26	70.45
KRH57547	Soybean	cytosol	69.73	69.73
KRH04258	Soybean	cytosol	69.73	69.73
TraesCS2D01G154800.1	Wheat	cytosol	60.15	58.36
TraesCS4D01G161700.1	Wheat	cytosol	60.54	57.88

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.2	MapMan:22.7.2.4	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0009504	GO:GO:0016020	InterPro:IPR000727
PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230	PANTHER:PTHR21230:SF27	SMART:SM00397	SUPFAM:SSF58038
InterPro:Sec20	TMHMM:TMhelix	InterPro:T_SNARE_dom	EnsemblPlantsGene:TraesCS7D01G382100	EnsemblPlants:TraesCS7D01G382100.1	TIGR:cd15861
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:495855387..495859510

Molecular Weight (calculated)

29152.1 Da

IEP (calculated)

6.165

GRAVY (calculated)

-0.397

Length

261 amino acids

Sequence
(BLAST)

001: MDLASVNEEL AEIDGQIADI FRALQNGFQK LDKIKDANRR SRQLEELTDK MRDCKRLIKD FERVVKDEAG SVDPNTAKFL NERKQSLIKE LNSYVALKKQ
101: HASDNKRVDL FDAPSGEDAF GEENVLLASN MSNQQLMQHG DNLMDETDQA LARSKQTVQE TINVGTETAA ALKAQTEQMS RVVNELDSIH FSMKKASKLV
201: KEIGRQVATD RCIMGLLFLI VAGVIAVIIV KIVNPHNKDI PDLPGLAPPV SRRLLSIVEN K

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.