Factsheet for Bra023003.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014333.1-P
Bra029785.1-P
Bra034085.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	Bra014333.1-P	AT3G09740.1	23515225
AT2G35190.1	Bra029785.1-P	AT3G09740.1	23515225
AT2G35190.1	Bra034085.1-P	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69072	Canola	cytosol, golgi, peroxisome	100.0	100.0
CDX84617	Canola	cytosol, golgi, peroxisome	100.0	100.0
Bra017331.1-P	Field mustard	cytosol	97.33	97.33
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	95.8	95.08
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	95.8	94.72
Solyc08g077550.2.1	Tomato	plastid	75.57	75.86
PGSC0003DMT400004684	Potato	cytosol	75.57	75.86
EER90393	Sorghum	cytosol	73.28	75.0
KRH04258	Soybean	cytosol	74.43	74.71
VIT_02s0012g00140.t01	Wine grape	nucleus	73.66	73.95
KRH57547	Soybean	cytosol	73.66	73.95
GSMUA_Achr11P...	Banana	cytosol	71.37	73.33
Os06t0715100-02	Rice	plasma membrane	72.52	72.8
TraesCS7A01G385500.1	Wheat	cytosol	72.14	72.41
TraesCS7D01G382100.1	Wheat	cytosol	72.14	72.41
HORVU7Hr1G091500.1	Barley	cytosol	72.14	72.41
TraesCS7B01G288400.1	Wheat	cytosol	71.76	71.76
GSMUA_Achr10P...	Banana	cytosol	72.9	70.74
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	72.9	66.09
Bra021248.1-P	Field mustard	cytosol	65.27	63.1
Bra001663.1-P	Field mustard	cytosol	63.36	61.25
Bra022216.1-P	Field mustard	cytosol	62.98	60.89
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	29.77	53.06
Bra014118.1-P	Field mustard	cytosol	25.95	44.44

Protein Annotations

EnsemblPlants:Bra023003.1	EnsemblPlants:Bra023003.1-P	EnsemblPlantsGene:Bra023003	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF27
PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI000253FE22
UniProt:M4E2K2	MapMan:13.4.2.3.2	MapMan:22.7.2.4	:	:	:

Description

AT2G35190 (E=8e-130) NPSN11, ATNPSN11, NSPN11 | NPSN11 (NOVEL PLANT SNARE 11); SNAP receptor/ protein transporter

Coordinates

chrA03:+:8178693..8180449

Molecular Weight (calculated)

29589.6 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.458

Length

262 amino acids

Sequence
(BLAST)

001: MDVSAVSEEL AELEGQINDI FRALSNGFQK LEKIKDANRQ SRQLEELTDK MRDCKSLIKD FDREVKSLES GNDANTNRML NDRRQSMVKE LNSYVALKKK
101: YSSNLASNNK RVDLFDGPAE DHMEENVLLA SNMSNQELMN KGNSMMDDTD QAIERGKKIV LETINVGTDT SAALKAQTDQ MSRVVNELDS IHFSLKKASK
201: LVKEIGRQVA TDKCIMAFLF LIVIGVIAII IVKIVNPNNK DIRDIPGLAP PAMNRRLLWN HY

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.