Factsheet for Bra022216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17440.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G17440.1	Bra013361.1-P	AT4G19030.1	21798944
AT3G17440.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G17440.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G17440.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92133	Canola	cytosol	98.89	98.89
AT3G17440.1	Thale cress	cytosol	92.25	92.94
Bra001663.1-P	Field mustard	cytosol	92.25	92.25
Bra021248.1-P	Field mustard	cytosol	91.88	91.88
Solyc12g098950.1.1	Tomato	cytosol	80.44	80.74
KRH19506	Soybean	cytosol	80.07	80.67
VIT_05s0020g00750.t01	Wine grape	cytosol	79.34	79.93
KRH02465	Soybean	cytosol	79.34	79.93
PGSC0003DMT400011730	Potato	cytosol	79.34	79.63
GSMUA_Achr2P07740_001	Banana	cytosol	76.38	76.67
GSMUA_Achr11P...	Banana	cytosol	74.17	75.56
GSMUA_Achr5P21000_001	Banana	cytosol	73.43	74.81
TraesCS2D01G154800.1	Wheat	cytosol	70.11	70.63
Zm00001d006939_P001	Maize	cytosol	69.0	70.57
Os07t0637400-01	Rice	plasma membrane	69.0	70.3
TraesCS2B01G174800.1	Wheat	cytosol	69.74	70.26
TraesCS2A01G149700.1	Wheat	cytosol	69.74	70.26
EER97617	Sorghum	cytosol	69.74	70.26
EER92219	Sorghum	cytosol	70.48	69.96
Zm00001d029281_P007	Maize	extracellular, plasma membrane	70.85	69.82
Zm00001d022275_P001	Maize	plasma membrane	68.27	69.81
Os03t0369800-01	Rice	plasma membrane	70.11	69.09
TraesCS4A01G162300.1	Wheat	cytosol	67.53	67.03
TraesCS4D01G161700.1	Wheat	cytosol	67.53	67.03
TraesCS4B01G157900.2	Wheat	cytosol	67.16	66.67
GSMUA_Achr2P07950_001	Banana	cytosol	9.59	65.0
Bra023003.1-P	Field mustard	cytosol, golgi, peroxisome	60.89	62.98
Bra017331.1-P	Field mustard	cytosol	60.89	62.98
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	60.89	62.5
Bra014118.1-P	Field mustard	cytosol	32.84	58.17
HORVU2Hr1G026870.4	Barley	plastid	53.51	52.92
GSMUA_Achr2P07960_001	Banana	cytosol	18.45	49.02
HORVU1Hr1G069840.13	Barley	extracellular	16.24	21.36

Protein Annotations

EnsemblPlants:Bra022216.1	EnsemblPlants:Bra022216.1-P	EnsemblPlantsGene:Bra022216	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35
PFAM:PF12352	PFscan:PS50192	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI000254754B
UniProt:M4E0B9	MapMan:22.7.2.4	:	:	:	:

Description

AT3G17440 (E=5e-141) NPSN13, ATNPSN13 | NPSN13 (NOVEL PLANT SNARE 13)

Coordinates

chrA05:+:19012757..19014793

Molecular Weight (calculated)

30651.1 Da

IEP (calculated)

8.052

GRAVY (calculated)

-0.568

Length

271 amino acids

Sequence
(BLAST)

001: MASNIPMSPQ LEQIHGEIRD HFRALANGFQ RLDKMKDSTR QSKQLEELTD KMRDCKRLVK DFDRELKDEE ANNPPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK IELFDMGAGP SAEPTPDDNV QVASAMSNQE LVDAGMKRMD ETDQAIQRSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMM FLFLIVCGVI AIIVVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNPEYMG R

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.