Factsheet for Bra021248.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17440.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G17440.1	Bra013361.1-P	AT4G19030.1	21798944
AT3G17440.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G17440.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G17440.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63023	Canola	cytosol	100.0	100.0
AT3G17440.1	Thale cress	cytosol	92.99	93.68
Bra022216.1-P	Field mustard	cytosol	91.88	91.88
Bra001663.1-P	Field mustard	cytosol	91.14	91.14
Solyc12g098950.1.1	Tomato	cytosol	82.66	82.96
KRH19506	Soybean	cytosol	81.92	82.53
PGSC0003DMT400011730	Potato	cytosol	81.55	81.85
KRH02465	Soybean	cytosol	81.18	81.78
VIT_05s0020g00750.t01	Wine grape	cytosol	78.6	79.18
GSMUA_Achr11P...	Banana	cytosol	76.01	77.44
GSMUA_Achr2P07740_001	Banana	cytosol	76.75	77.04
GSMUA_Achr5P21000_001	Banana	cytosol	75.28	76.69
Os07t0637400-01	Rice	plasma membrane	70.11	71.43
EER97617	Sorghum	cytosol	70.85	71.38
TraesCS2B01G174800.1	Wheat	cytosol	70.11	70.63
Zm00001d022275_P001	Maize	plasma membrane	69.0	70.57
TraesCS2D01G154800.1	Wheat	cytosol	69.74	70.26
Zm00001d006939_P001	Maize	cytosol	68.63	70.19
Zm00001d029281_P007	Maize	extracellular, plasma membrane	71.22	70.18
EER92219	Sorghum	cytosol	70.48	69.96
TraesCS2A01G149700.1	Wheat	cytosol	69.0	69.52
Os03t0369800-01	Rice	plasma membrane	70.48	69.45
TraesCS4A01G162300.1	Wheat	cytosol	67.53	67.03
TraesCS4B01G157900.2	Wheat	cytosol	67.16	66.67
TraesCS4D01G161700.1	Wheat	cytosol	67.16	66.67
Bra023003.1-P	Field mustard	cytosol, golgi, peroxisome	63.1	65.27
Bra017331.1-P	Field mustard	cytosol	63.1	65.27
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	63.1	64.77
GSMUA_Achr2P07950_001	Banana	cytosol	9.23	62.5
Bra014118.1-P	Field mustard	cytosol	32.1	56.86
HORVU2Hr1G026870.4	Barley	plastid	54.61	54.01
GSMUA_Achr2P07960_001	Banana	cytosol	18.45	49.02
HORVU1Hr1G069840.13	Barley	extracellular	17.34	22.82

Protein Annotations

EnsemblPlants:Bra021248.1	EnsemblPlants:Bra021248.1-P	EnsemblPlantsGene:Bra021248	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR21230	PANTHER:PTHR21230:SF35
PFAM:PF12352	PFscan:PS50192	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI00025437E9
UniProt:M4DXK2	MapMan:22.7.2.4	:	:	:	:

Description

AT3G17440 (E=7e-142) NPSN13, ATNPSN13 | NPSN13 (NOVEL PLANT SNARE 13)

Coordinates

chrA01:+:23077885..23079742

Molecular Weight (calculated)

30630.0 Da

IEP (calculated)

7.506

GRAVY (calculated)

-0.542

Length

271 amino acids

Sequence
(BLAST)

001: MGSNLPMSPE LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRDCKRLVK DFDRELKEEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGA SGEPTAEENV QVASAMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTIEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSLKK
201: ASQLVKEIGR QVATDKCIMM FLFLIVCGVV AIIVVKIVHP NNKDIRDIPG LAPPAPARKL LYLRNPEYLQ R

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.