Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- golgi 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 95.6 | 94.91 |
TraesCS4B01G157900.2 | Wheat | cytosol | 86.08 | 86.08 |
Os03t0369800-01 | Rice | plasma membrane | 86.45 | 85.82 |
TraesCS4D01G161700.1 | Wheat | cytosol | 85.71 | 85.71 |
TraesCS4A01G162300.1 | Wheat | cytosol | 85.35 | 85.35 |
EER97617 | Sorghum | cytosol | 78.75 | 79.93 |
GSMUA_Achr5P21000_001 | Banana | cytosol | 73.99 | 75.94 |
GSMUA_Achr11P... | Banana | cytosol | 73.63 | 75.56 |
GSMUA_Achr2P07740_001 | Banana | cytosol | 73.99 | 74.81 |
Solyc12g098950.1.1 | Tomato | cytosol | 71.43 | 72.22 |
CDX75916 | Canola | cytosol | 71.06 | 71.59 |
PGSC0003DMT400011730 | Potato | cytosol | 70.7 | 71.48 |
VIT_05s0020g00750.t01 | Wine grape | cytosol | 70.33 | 71.38 |
Bra001663.1-P | Field mustard | cytosol | 70.7 | 71.22 |
CDX82368 | Canola | cytosol | 70.7 | 71.22 |
AT3G17440.1 | Thale cress | cytosol | 69.96 | 71.0 |
AT1G48240.1 | Thale cress | cytosol | 68.86 | 70.94 |
KRH19506 | Soybean | cytosol | 69.6 | 70.63 |
CDY66384 | Canola | cytosol | 69.96 | 70.48 |
CDY63023 | Canola | cytosol | 69.96 | 70.48 |
CDY48701 | Canola | cytosol | 69.96 | 70.48 |
CDX92133 | Canola | cytosol | 69.96 | 70.48 |
Bra022216.1-P | Field mustard | cytosol | 69.96 | 70.48 |
Bra021248.1-P | Field mustard | cytosol | 69.96 | 70.48 |
KRH02465 | Soybean | cytosol | 68.86 | 69.89 |
EER90393 | Sorghum | cytosol | 58.61 | 62.5 |
CDX77329 | Canola | cytosol | 44.69 | 53.74 |
CDY53169 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 24.54 | 52.34 |
CDY41849 | Canola | cytosol | 27.11 | 48.37 |
Bra014118.1-P | Field mustard | cytosol | 27.11 | 48.37 |
CDY41852 | Canola | cytosol | 26.37 | 47.06 |
Protein Annotations
Gene3D:1.20.5.110 | MapMan:22.7.2.4 | EntrezGene:8080775 | UniProt:C5WYQ2 | ncoils:Coil | EnsemblPlants:EER92219 |
ProteinID:EER92219 | ProteinID:EER92219.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006623 | GO:GO:0006810 |
GO:GO:0006888 | GO:GO:0006891 | GO:GO:0006896 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012507 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 | GO:GO:0031902 | GO:GO:0042147 |
GO:GO:0048280 | InterPro:IPR000727 | PFAM:PF03908 | PFscan:PS50192 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF35 |
SMART:SM00397 | EnsemblPlantsGene:SORBI_3001G360200 | SUPFAM:SSF58038 | InterPro:Sec20 | TMHMM:TMhelix | InterPro:T_SNARE_dom |
UniParc:UPI0001A821E6 | RefSeq:XP_002465221.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:64965903..64972117
Molecular Weight (calculated)
30860.3 Da
IEP (calculated)
8.207
GRAVY (calculated)
-0.478
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDVPMTPE LEQIDGEIHD IFRALQNGFQ KMDKIKDSNR QAKQLEDLTV KMKECKRLIK EFDRILKDEE SNNPPEINKQ LNDRKQFMIK ELNSYVTLRK
101: TYQSSLGNNN KRVELFDMGA GSSEPAVEDN IQMASAMTNQ QLIDAGRNQM DQTDQAIERS KMVVAQTVET GAQTAATLTA QTEQMKRIGN ELDTVHFSLK
201: KASKLVKEIG RQVATDKCIM AFLFLIVVGV IAIIVVKIVH PNNKNIRDIP GLAPPAQNYQ NRRLLWAEAF IGP
101: TYQSSLGNNN KRVELFDMGA GSSEPAVEDN IQMASAMTNQ QLIDAGRNQM DQTDQAIERS KMVVAQTVET GAQTAATLTA QTEQMKRIGN ELDTVHFSLK
201: KASKLVKEIG RQVATDKCIM AFLFLIVVGV IAIIVVKIVH PNNKNIRDIP GLAPPAQNYQ NRRLLWAEAF IGP
001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
Arabidopsis Description
NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.