Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75916 | Canola | cytosol | 96.65 | 95.94 |
| Bra001663.1-P | Field mustard | cytosol | 95.91 | 95.2 |
| CDX82368 | Canola | cytosol | 95.91 | 95.2 |
| Bra021248.1-P | Field mustard | cytosol | 93.68 | 92.99 |
| CDY63023 | Canola | cytosol | 93.68 | 92.99 |
| Bra022216.1-P | Field mustard | cytosol | 92.94 | 92.25 |
| CDX92133 | Canola | cytosol | 92.94 | 92.25 |
| AT1G48240.1 | Thale cress | cytosol | 90.71 | 92.08 |
| CDY66384 | Canola | cytosol | 92.57 | 91.88 |
| CDY48701 | Canola | cytosol | 92.57 | 91.88 |
| Solyc12g098950.1.1 | Tomato | cytosol | 84.01 | 83.7 |
| KRH19506 | Soybean | cytosol | 83.64 | 83.64 |
| PGSC0003DMT400011730 | Potato | cytosol | 82.9 | 82.59 |
| KRH02465 | Soybean | cytosol | 82.53 | 82.53 |
| VIT_05s0020g00750.t01 | Wine grape | cytosol | 81.78 | 81.78 |
| GSMUA_Achr11P... | Banana | cytosol | 77.7 | 78.57 |
| GSMUA_Achr5P21000_001 | Banana | cytosol | 77.32 | 78.2 |
| GSMUA_Achr2P07740_001 | Banana | cytosol | 78.44 | 78.15 |
| TraesCS2B01G174800.1 | Wheat | cytosol | 71.75 | 71.75 |
| Os07t0637400-01 | Rice | plasma membrane | 70.63 | 71.43 |
| TraesCS2D01G154800.1 | Wheat | cytosol | 71.38 | 71.38 |
| EER97617 | Sorghum | cytosol | 71.0 | 71.0 |
| Zm00001d022275_P001 | Maize | plasma membrane | 69.89 | 70.94 |
| Zm00001d006939_P001 | Maize | cytosol | 69.89 | 70.94 |
| TraesCS2A01G149700.1 | Wheat | cytosol | 70.63 | 70.63 |
| Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 71.75 | 70.18 |
| EER92219 | Sorghum | cytosol | 71.0 | 69.96 |
| Os03t0369800-01 | Rice | plasma membrane | 70.63 | 69.09 |
| TraesCS4D01G161700.1 | Wheat | cytosol | 68.77 | 67.77 |
| TraesCS4A01G162300.1 | Wheat | cytosol | 68.03 | 67.03 |
| TraesCS4B01G157900.2 | Wheat | cytosol | 68.03 | 67.03 |
| AT2G35190.1 | Thale cress | cytosol, nucleus, peroxisome | 63.94 | 64.91 |
| GSMUA_Achr2P07950_001 | Banana | cytosol | 9.29 | 62.5 |
| HORVU2Hr1G026870.4 | Barley | plastid | 55.76 | 54.74 |
| GSMUA_Achr2P07960_001 | Banana | cytosol | 19.7 | 51.96 |
| HORVU1Hr1G069840.13 | Barley | extracellular | 17.1 | 22.33 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.2.4 | EntrezGene:821008 | UniProt:A0A178VLU0 | ProteinID:AEE75953.1 | ArrayExpress:AT3G17440 |
| EnsemblPlantsGene:AT3G17440 | RefSeq:AT3G17440 | TAIR:AT3G17440 | RefSeq:AT3G17440-TAIR-G | EnsemblPlants:AT3G17440.1 | TAIR:AT3G17440.1 |
| EMBL:AY084645 | EMBL:AY099622 | ProteinID:BAB02920.1 | EMBL:BT001249 | ncoils:Coil | GO:GO:0000149 |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006888 | GO:GO:0006891 |
| GO:GO:0006896 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012507 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 | GO:GO:0031902 | GO:GO:0042147 | GO:GO:0048280 |
| InterPro:IPR000727 | Symbol:NPSN13 | RefSeq:NP_566578.1 | ProteinID:OAP06023.1 | PFAM:PF12352 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50192 | PANTHER:PTHR21230 |
| PANTHER:PTHR21230:SF35 | UniProt:Q9LRP1 | SMART:SM00397 | SUPFAM:SSF58038 | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI000013053B | SEG:seg | : | : | : | : |
Description
NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
Coordinates
chr3:-:5969565..5972572
Molecular Weight (calculated)
30415.7 Da
IEP (calculated)
7.440
GRAVY (calculated)
-0.548
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.