Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48240.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
| AT3G17440.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 84.81 | 86.09 |
| GSMUA_Achr5P21000_001 | Banana | cytosol | 84.44 | 85.71 |
| Os07t0637400-01 | Rice | plasma membrane | 78.15 | 79.32 |
| Solyc12g098950.1.1 | Tomato | cytosol | 78.52 | 78.52 |
| AT3G17440.1 | Thale cress | cytosol | 78.15 | 78.44 |
| CDX75916 | Canola | cytosol | 78.52 | 78.23 |
| PGSC0003DMT400011730 | Potato | cytosol | 78.15 | 78.15 |
| Zm00001d006939_P001 | Maize | cytosol | 76.3 | 77.74 |
| AT1G48240.1 | Thale cress | cytosol | 76.3 | 77.74 |
| VIT_05s0020g00750.t01 | Wine grape | cytosol | 77.41 | 77.7 |
| EER97617 | Sorghum | cytosol | 77.41 | 77.7 |
| Bra001663.1-P | Field mustard | cytosol | 77.78 | 77.49 |
| CDX82368 | Canola | cytosol | 77.78 | 77.49 |
| Zm00001d022275_P001 | Maize | plasma membrane | 75.93 | 77.36 |
| CDX92133 | Canola | cytosol | 77.04 | 76.75 |
| CDY48701 | Canola | cytosol | 77.04 | 76.75 |
| CDY63023 | Canola | cytosol | 77.04 | 76.75 |
| Bra021248.1-P | Field mustard | cytosol | 77.04 | 76.75 |
| KRH19506 | Soybean | cytosol | 76.3 | 76.58 |
| TraesCS2B01G174800.1 | Wheat | cytosol | 76.3 | 76.58 |
| CDY66384 | Canola | cytosol | 76.67 | 76.38 |
| Bra022216.1-P | Field mustard | cytosol | 76.67 | 76.38 |
| TraesCS2D01G154800.1 | Wheat | cytosol | 75.93 | 76.21 |
| TraesCS2A01G149700.1 | Wheat | cytosol | 75.19 | 75.46 |
| KRH02465 | Soybean | cytosol | 75.19 | 75.46 |
| TraesCS4D01G161700.1 | Wheat | cytosol | 75.19 | 74.36 |
| Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 75.56 | 74.18 |
| Os03t0369800-01 | Rice | plasma membrane | 75.56 | 74.18 |
| EER92219 | Sorghum | cytosol | 74.81 | 73.99 |
| TraesCS4B01G157900.2 | Wheat | cytosol | 74.44 | 73.63 |
| TraesCS4A01G162300.1 | Wheat | cytosol | 74.07 | 73.26 |
| GSMUA_Achr2P07950_001 | Banana | cytosol | 10.37 | 70.0 |
| GSMUA_Achr11P... | Banana | cytosol | 65.56 | 69.41 |
| GSMUA_Achr10P... | Banana | cytosol | 63.33 | 63.33 |
| GSMUA_Achr2P07960_001 | Banana | cytosol | 22.96 | 60.78 |
| HORVU2Hr1G026870.4 | Barley | plastid | 61.11 | 60.22 |
| CDX77329 | Canola | cytosol | 49.26 | 58.59 |
| CDY53169 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 26.67 | 56.25 |
| Bra014118.1-P | Field mustard | cytosol | 31.11 | 54.9 |
| CDY41849 | Canola | cytosol | 31.11 | 54.9 |
| CDY41852 | Canola | cytosol | 28.15 | 49.67 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.2.4 | ncoils:Coil | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:GSMUA_Achr2G07740_001 | EnsemblPlants:GSMUA_Achr2P07740_001 | EnsemblPlants:GSMUA_Achr2T07740_001 | InterPro:IPR000727 | UniProt:M0S615 | PFAM:PF03908 |
| PFscan:PS50192 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF35 | SMART:SM00397 | SUPFAM:SSF58038 | InterPro:Sec20 |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0002969EFD | SEG:seg | : | : |
Description
Novel plant SNARE 13 [Source:GMGC_GENE;Acc:GSMUA_Achr2G07740_001]
Coordinates
chr2:+:12055659..12064679
Molecular Weight (calculated)
30335.6 Da
IEP (calculated)
6.124
GRAVY (calculated)
-0.497
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDMPMSAE LEQIDGEIQD IFRALENGFQ KLDKIKDSNR QSKQLEELTG KMRECKRLIK EFDREIKDQE SRHAPDVNKQ LNEKKQTMIK ELNSYVALRK
101: TYQSSLGNKR VELFDMGAGG NDPVAEDNVK MASDMSNQEL VDAGRKQMDE TDQAIQRSKM VVEQTIEVGT QTAANLKQQT DQMGRIVNEL DTIQFSIKKA
201: TQLVKEIGRQ VATDKCIMFF LFLIVCGVIA IIIVKVVNPN NKNIRDIPGL APPAPTARRL LSAEAFGSLG
101: TYQSSLGNKR VELFDMGAGG NDPVAEDNVK MASDMSNQEL VDAGRKQMDE TDQAIQRSKM VVEQTIEVGT QTAANLKQQT DQMGRIVNEL DTIQFSIKKA
201: TQLVKEIGRQ VATDKCIMFF LFLIVCGVIA IIIVKVVNPN NKNIRDIPGL APPAPTARRL LSAEAFGSLG
001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
Arabidopsis Description
NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.