Factsheet for GSMUA_Achr11P07120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P09270_001
GSMUA_Achr6P22560_001
GSMUA_Achr9P00150_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35190.1	GSMUA_Achr5P09270_001	AT3G09740.1	23515225
AT2G35190.1	GSMUA_Achr6P22560_001	AT3G09740.1	23515225
AT2G35190.1	GSMUA_Achr9P00150_001	AT3G09740.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	87.45	82.59
VIT_02s0012g00140.t01	Wine grape	nucleus	81.96	80.08
Solyc08g077550.2.1	Tomato	plastid	80.78	78.93
PGSC0003DMT400004684	Potato	cytosol	80.0	78.16
EER90393	Sorghum	cytosol	77.65	77.34
KRH04258	Soybean	cytosol	76.86	75.1
KRH57547	Soybean	cytosol	75.69	73.95
TraesCS7B01G288400.1	Wheat	cytosol	75.69	73.66
TraesCS7A01G385500.1	Wheat	cytosol	75.29	73.56
Os06t0715100-02	Rice	plasma membrane	74.9	73.18
TraesCS7D01G382100.1	Wheat	cytosol	74.9	73.18
HORVU7Hr1G091500.1	Barley	cytosol	74.51	72.8
CDX84617	Canola	cytosol, golgi, peroxisome	73.33	71.37
CDY69072	Canola	cytosol, golgi, peroxisome	73.33	71.37
Bra023003.1-P	Field mustard	cytosol, golgi, peroxisome	73.33	71.37
Bra017331.1-P	Field mustard	cytosol	72.94	70.99
AT2G35190.1	Thale cress	cytosol, nucleus, peroxisome	73.73	70.94
CDY59046	Canola	cytosol, golgi, peroxisome	72.55	70.61
CDY31671	Canola	cytosol, nucleus, peroxisome	71.37	68.94
CDX84253	Canola	cytosol, nucleus, peroxisome	71.37	68.94
Bra005361.1-P	Field mustard	cytosol, nucleus, peroxisome	71.37	68.94
Zm00001d036406_P001	Maize	mitochondrion, plasma membrane	78.04	68.86
GSMUA_Achr5P21000_001	Banana	cytosol	70.2	67.29
GSMUA_Achr11P...	Banana	cytosol	69.41	66.54
GSMUA_Achr2P07740_001	Banana	cytosol	69.41	65.56
GSMUA_Achr2P07950_001	Banana	cytosol	8.24	52.5
HORVU2Hr1G084560.1	Barley	extracellular, plasma membrane	28.24	48.98
GSMUA_Achr2P07960_001	Banana	cytosol	17.65	44.12

Protein Annotations

EnsemblPlants:GSMUA_Achr11P07120_001	EnsemblPlants:GSMUA_Achr11T07120_001	EnsemblPlantsGene:GSMUA_Achr11G07120_001	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:Sec20	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR21230
PANTHER:PTHR21230:SF27	PFAM:PF03908	PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI000295BB63	UniProt:M0RQ42	MapMan:13.4.2.3.2	MapMan:22.7.2.4	:

Description

Novel plant SNARE 11 [Source:GMGC_GENE;Acc:GSMUA_Achr11G07120_001]

Coordinates

chr11:-:5565208..5572376

Molecular Weight (calculated)

29000.1 Da

IEP (calculated)

7.067

GRAVY (calculated)

-0.513

Length

255 amino acids

Sequence
(BLAST)

001: MDLTDISEEL AHIEGQISDI FRALSNGFQK LEKIKDSNRR SRQLEELTGK LRECKRLIKE FERVMKEEEI RNTHDTNKRL NEKKQSMIKE LNSYVALKKQ
101: HASENKRLDL FDGPDGGDVF AEENVLLASS MTNQQLMDNG NRMMDETDQA IERSKKVVEE TVNVGAETAA SLKAQTEQMS RIVNELDSIH FSIKKASQLV
201: KEIGRQVATD RCIMGMLFLI VIGVITIIIV KLVHPNNKDI RDIPGLAPPA NRKLL

Best Arabidopsis Sequence Match ( AT2G35190.1 )
(BLAST)

001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY

Arabidopsis Description

NPSN11Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.