CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH22653
KRH26664
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48240.1	KRH11076	AT4G19030.1	21798944
AT1G48240.1	KRH21197	AT4G19030.1	21798944
AT1G48240.1	KRH42923	AT4G19030.1	21798944
AT1G48240.1	KRH42926	AT4G19030.1	21798944
AT1G48240.1	KRH45251	AT4G19030.1	21798944
AT1G48240.1	KRH59035	AT4G19030.1	21798944
AT1G48240.1	KRH59036	AT4G19030.1	21798944
AT3G17440.1	KRH11076	AT4G19030.1	21798944
AT3G17440.1	KRH21197	AT4G19030.1	21798944
AT3G17440.1	KRH42923	AT4G19030.1	21798944
AT3G17440.1	KRH42926	AT4G19030.1	21798944
AT3G17440.1	KRH45251	AT4G19030.1	21798944
AT3G17440.1	KRH59035	AT4G19030.1	21798944
AT3G17440.1	KRH59036	AT4G19030.1	21798944
AT3G17440.1	KRH22653	AT5G22290.1	21798944
AT3G17440.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02465	Soybean	cytosol	98.51	98.51
Solyc12g098950.1.1	Tomato	cytosol	85.5	85.19
PGSC0003DMT400011730	Potato	cytosol	84.76	84.44
AT3G17440.1	Thale cress	cytosol	83.64	83.64
CDX75916	Canola	cytosol	84.01	83.39
VIT_05s0020g00750.t01	Wine grape	cytosol	83.27	83.27
Bra001663.1-P	Field mustard	cytosol	82.53	81.92
CDX82368	Canola	cytosol	82.53	81.92
CDY48701	Canola	cytosol	82.53	81.92
Bra021248.1-P	Field mustard	cytosol	82.53	81.92
CDY63023	Canola	cytosol	82.53	81.92
AT1G48240.1	Thale cress	cytosol	80.67	81.89
CDX92133	Canola	cytosol	81.04	80.44
Bra022216.1-P	Field mustard	cytosol	80.67	80.07
CDY66384	Canola	cytosol	80.3	79.7
GSMUA_Achr5P21000_001	Banana	cytosol	75.84	76.69
GSMUA_Achr11P...	Banana	cytosol	75.46	76.32
GSMUA_Achr2P07740_001	Banana	cytosol	76.58	76.3
Zm00001d006939_P001	Maize	cytosol	71.38	72.45
Zm00001d022275_P001	Maize	plasma membrane	70.63	71.7
Os07t0637400-01	Rice	plasma membrane	70.63	71.43
EER97617	Sorghum	cytosol	71.38	71.38
TraesCS2B01G174800.1	Wheat	cytosol	71.0	71.0
TraesCS2D01G154800.1	Wheat	cytosol	70.63	70.63
TraesCS2A01G149700.1	Wheat	cytosol	69.89	69.89
Zm00001d029281_P007	Maize	extracellular, plasma membrane	71.38	69.82
EER92219	Sorghum	cytosol	70.63	69.6
Os03t0369800-01	Rice	plasma membrane	69.52	68.0
TraesCS4B01G157900.2	Wheat	cytosol	68.03	67.03
TraesCS4D01G161700.1	Wheat	cytosol	68.03	67.03
KRH04258	Soybean	cytosol	64.68	66.67
TraesCS4A01G162300.1	Wheat	cytosol	67.29	66.3
KRH57547	Soybean	cytosol	63.2	65.13
GSMUA_Achr2P07950_001	Banana	cytosol	9.29	62.5
CDX77329	Canola	cytosol	52.42	62.11
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	27.88	58.59
HORVU2Hr1G026870.4	Barley	plastid	56.13	55.11
CDY41852	Canola	cytosol	30.48	53.59
GSMUA_Achr2P07960_001	Banana	cytosol	20.07	52.94
CDY41849	Canola	cytosol	29.74	52.29
Bra014118.1-P	Field mustard	cytosol	29.74	52.29
HORVU1Hr1G069840.13	Barley	extracellular	16.73	21.84

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.2.4	EMBL:ACUP02008180	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G119900	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794
GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006888	GO:GO:0006891	GO:GO:0006896
GO:GO:0008150	GO:GO:0009987	GO:GO:0012507	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280	UniProt:I1LYG4	InterPro:IPR000727
EnsemblPlants:KRH19506	ProteinID:KRH19506	ProteinID:KRH19506.1	PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230
PANTHER:PTHR21230:SF35	SMART:SM00397	SUPFAM:SSF58038	InterPro:Sec20	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI000233BF13	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:23244474..23250277

Molecular Weight (calculated)

30345.6 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.518

Length

269 amino acids

Sequence
(BLAST)

001: MASNLQMSPQ VEQIHGEIRD NFRALANGFQ KLDKIKDANR QSNQLEELTD KMRECKRLIK EFDREIKDEE GRNPPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMNTIGNKK LELFDNGAGV SVPTAEENVQ LASEMSNQEL INAGTKTMDE TDQAIERSKQ VVHQTIEVGT QTAATLKGQT EQMGRIVNEL DSIQFSIKKA
201: SQLVKEIGRQ VATDKCIMLF LFLIVCGVIA IIVVKIVHPN NKDIRDIPGL APPVPTRRLL YARSGDHLD

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.