Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH19506 | Soybean | cytosol | 98.51 | 98.51 |
| Solyc12g098950.1.1 | Tomato | cytosol | 85.13 | 84.81 |
| PGSC0003DMT400011730 | Potato | cytosol | 84.39 | 84.07 |
| AT3G17440.1 | Thale cress | cytosol | 82.53 | 82.53 |
| VIT_05s0020g00750.t01 | Wine grape | cytosol | 82.53 | 82.53 |
| CDX75916 | Canola | cytosol | 82.9 | 82.29 |
| Bra021248.1-P | Field mustard | cytosol | 81.78 | 81.18 |
| CDY48701 | Canola | cytosol | 81.78 | 81.18 |
| CDY63023 | Canola | cytosol | 81.78 | 81.18 |
| Bra001663.1-P | Field mustard | cytosol | 81.41 | 80.81 |
| CDX82368 | Canola | cytosol | 81.41 | 80.81 |
| AT1G48240.1 | Thale cress | cytosol | 79.55 | 80.75 |
| CDX92133 | Canola | cytosol | 80.3 | 79.7 |
| Bra022216.1-P | Field mustard | cytosol | 79.93 | 79.34 |
| CDY66384 | Canola | cytosol | 79.55 | 78.97 |
| GSMUA_Achr5P21000_001 | Banana | cytosol | 75.46 | 76.32 |
| GSMUA_Achr11P... | Banana | cytosol | 74.72 | 75.56 |
| GSMUA_Achr2P07740_001 | Banana | cytosol | 75.46 | 75.19 |
| Zm00001d006939_P001 | Maize | cytosol | 71.0 | 72.08 |
| Zm00001d022275_P001 | Maize | plasma membrane | 70.26 | 71.32 |
| Os07t0637400-01 | Rice | plasma membrane | 69.89 | 70.68 |
| EER97617 | Sorghum | cytosol | 70.63 | 70.63 |
| TraesCS2B01G174800.1 | Wheat | cytosol | 70.26 | 70.26 |
| TraesCS2D01G154800.1 | Wheat | cytosol | 69.89 | 69.89 |
| TraesCS2A01G149700.1 | Wheat | cytosol | 69.14 | 69.14 |
| Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 70.63 | 69.09 |
| EER92219 | Sorghum | cytosol | 69.89 | 68.86 |
| Os03t0369800-01 | Rice | plasma membrane | 68.4 | 66.91 |
| KRH04258 | Soybean | cytosol | 64.31 | 66.28 |
| TraesCS4B01G157900.2 | Wheat | cytosol | 66.91 | 65.93 |
| TraesCS4D01G161700.1 | Wheat | cytosol | 66.91 | 65.93 |
| TraesCS4A01G162300.1 | Wheat | cytosol | 66.17 | 65.2 |
| KRH57547 | Soybean | cytosol | 62.83 | 64.75 |
| GSMUA_Achr2P07950_001 | Banana | cytosol | 9.29 | 62.5 |
| CDX77329 | Canola | cytosol | 52.42 | 62.11 |
| CDY53169 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 27.51 | 57.81 |
| HORVU2Hr1G026870.4 | Barley | plastid | 55.76 | 54.74 |
| CDY41852 | Canola | cytosol | 29.74 | 52.29 |
| CDY41849 | Canola | cytosol | 29.74 | 52.29 |
| Bra014118.1-P | Field mustard | cytosol | 29.74 | 52.29 |
| GSMUA_Achr2P07960_001 | Banana | cytosol | 19.7 | 51.96 |
| HORVU1Hr1G069840.13 | Barley | extracellular | 16.36 | 21.36 |
Protein Annotations
| Gene3D:1.20.5.110 | EntrezGene:100795077 | MapMan:22.7.2.4 | EMBL:ACUP02010307 | ncoils:Coil | EnsemblPlantsGene:GLYMA_17G040400 |
| GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006888 | GO:GO:0006891 |
| GO:GO:0006896 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012507 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0031201 | GO:GO:0031902 | GO:GO:0042147 | GO:GO:0048280 | UniProt:I1MRY0 |
| InterPro:IPR000727 | EnsemblPlants:KRH02465 | ProteinID:KRH02465 | ProteinID:KRH02465.1 | PFAM:PF03908 | PFscan:PS50192 |
| PANTHER:PTHR21230 | PANTHER:PTHR21230:SF35 | SMART:SM00397 | SUPFAM:SSF58038 | InterPro:Sec20 | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI000233F515 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:-:2982929..2987246
Molecular Weight (calculated)
30357.5 Da
IEP (calculated)
6.535
GRAVY (calculated)
-0.543
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNLQMSPQ VEQIHGEIRD NFRALANGFQ KLDKIKDANR QSNQLEELTD KMRECKRLIK EYDREIKDEE GRNPPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMNTIGNKK LELFDNGAGA SVSTAEENVQ LASEMSNQEL INAGTKTMDE TDQAIERSKQ VVHQTIEVGT QTAATLKGQT EQMGRIVNEL DSIQFSIKKA
201: SQLVKEIGRQ VATDKCIMLF LFLIVCGVIA IIVVKIVHPN NKDIRDIPGL APPVPTRRLL YARSGDHFD
101: TYMNTIGNKK LELFDNGAGA SVSTAEENVQ LASEMSNQEL INAGTKTMDE TDQAIERSKQ VVHQTIEVGT QTAATLKGQT EQMGRIVNEL DSIQFSIKKA
201: SQLVKEIGRQ VATDKCIMLF LFLIVCGVIA IIVVKIVHPN NKDIRDIPGL APPVPTRRLL YARSGDHFD
001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
Arabidopsis Description
NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.