Factsheet for Os07t0637400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022275_P001	Maize	plasma membrane	89.85	90.19
EER97617	Sorghum	cytosol	90.6	89.59
Zm00001d006939_P001	Maize	cytosol	89.1	89.43
TraesCS2D01G154800.1	Wheat	cytosol	87.22	86.25
TraesCS2B01G174800.1	Wheat	cytosol	87.22	86.25
TraesCS2A01G149700.1	Wheat	cytosol	86.84	85.87
Os03t0369800-01	Rice	plasma membrane	81.95	79.27
GSMUA_Achr2P07740_001	Banana	cytosol	79.32	78.15
GSMUA_Achr5P21000_001	Banana	cytosol	77.44	77.44
GSMUA_Achr11P...	Banana	cytosol	75.19	75.19
AT1G48240.1	Thale cress	cytosol	71.8	72.08
Solyc12g098950.1.1	Tomato	cytosol	72.18	71.11
PGSC0003DMT400011730	Potato	cytosol	71.8	70.74
AT3G17440.1	Thale cress	cytosol	71.43	70.63
KRH19506	Soybean	cytosol	71.43	70.63
CDX75916	Canola	cytosol	71.8	70.48
CDY63023	Canola	cytosol	71.43	70.11
Bra021248.1-P	Field mustard	cytosol	71.43	70.11
VIT_05s0020g00750.t01	Wine grape	cytosol	70.68	69.89
KRH02465	Soybean	cytosol	70.68	69.89
Bra001663.1-P	Field mustard	cytosol	71.05	69.74
CDX82368	Canola	cytosol	71.05	69.74
CDX92133	Canola	cytosol	70.68	69.37
CDY48701	Canola	cytosol	70.68	69.37
Bra022216.1-P	Field mustard	cytosol	70.3	69.0
CDY66384	Canola	cytosol	70.3	69.0
HORVU2Hr1G026870.4	Barley	plastid	68.8	66.79
Os06t0715100-02	Rice	plasma membrane	63.16	64.37
CDX77329	Canola	cytosol	45.11	52.86
CDY53169	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	25.19	52.34
CDY41849	Canola	cytosol	27.07	47.06
CDY41852	Canola	cytosol	27.07	47.06
Bra014118.1-P	Field mustard	cytosol	27.07	47.06

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.2.4	EntrezGene:4344040	EMBL:AK067595	ProteinID:BAC16405.1	ProteinID:BAF22316.1
ProteinID:BAT02833.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005783
GO:GO:0005789	GO:GO:0005794	GO:GO:0005829	GO:GO:0006623	GO:GO:0006810	GO:GO:0006888
GO:GO:0006891	GO:GO:0006896	GO:GO:0008150	GO:GO:0009987	GO:GO:0012507	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280
InterPro:IPR000727	EnsemblPlantsGene:Os07g0637400	EnsemblPlants:Os07t0637400-01	PFAM:PF03908	PFscan:PS50192	PANTHER:PTHR21230
PANTHER:PTHR21230:SF35	UniProt:Q8H5R6	SMART:SM00397	SUPFAM:SSF58038	InterPro:Sec20	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI00000AD54B	RefSeq:XP_015646134.1	:	:	:

Description

NOVEL PLANT SNARE 13Similar to Novel plant SNARE 12 (AtNPSN12). (Os07t0637400-01)

Coordinates

chr7:+:26501465..26504227

Molecular Weight (calculated)

30063.4 Da

IEP (calculated)

8.811

GRAVY (calculated)

-0.545

Length

266 amino acids

Sequence
(BLAST)

001: MASDVPMSPE LEQVDGEIQD IFRALQNGFQ KMDKIKDSNR QSKQLEDLTG KMRECKRLIK EFDRILKEDE KKNSADVNKQ LNDKKQLMIK ELNSYVTLRK
101: TYQSSLGNKR IELFDTGNDQ VAEDNTVQMA SEMSNQQLMD AGRKQMDQTD QVIERSKKVV AQTVEVGSQT AAALSQQTEQ MKRIGNELDS VHFSLKKASQ
201: MVKEIGRQVA TDKCIMAFLF LIVCGVIAII VVKIVNPHNK NIRDIPGLAP PAQNRKLLSI ESFGSL

Best Arabidopsis Sequence Match ( AT3G17440.1 )
(BLAST)

001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM

Arabidopsis Description

NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.