Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 | |
| Solyc06g074170.2.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011730 | Potato | cytosol | 98.89 | 98.89 |
| KRH19506 | Soybean | cytosol | 85.19 | 85.5 |
| KRH02465 | Soybean | cytosol | 84.81 | 85.13 |
| VIT_05s0020g00750.t01 | Wine grape | cytosol | 84.07 | 84.39 |
| AT3G17440.1 | Thale cress | cytosol | 83.7 | 84.01 |
| CDX75916 | Canola | cytosol | 83.7 | 83.39 |
| CDY63023 | Canola | cytosol | 82.96 | 82.66 |
| Bra021248.1-P | Field mustard | cytosol | 82.96 | 82.66 |
| Bra001663.1-P | Field mustard | cytosol | 82.22 | 81.92 |
| CDY48701 | Canola | cytosol | 82.22 | 81.92 |
| CDX82368 | Canola | cytosol | 82.22 | 81.92 |
| AT1G48240.1 | Thale cress | cytosol | 80.0 | 81.51 |
| CDX92133 | Canola | cytosol | 81.11 | 80.81 |
| CDY66384 | Canola | cytosol | 80.74 | 80.44 |
| Bra022216.1-P | Field mustard | cytosol | 80.74 | 80.44 |
| GSMUA_Achr2P07740_001 | Banana | cytosol | 78.52 | 78.52 |
| GSMUA_Achr5P21000_001 | Banana | cytosol | 77.04 | 78.2 |
| GSMUA_Achr11P... | Banana | cytosol | 76.3 | 77.44 |
| Zm00001d006939_P001 | Maize | cytosol | 72.96 | 74.34 |
| Zm00001d022275_P001 | Maize | plasma membrane | 72.59 | 73.96 |
| EER97617 | Sorghum | cytosol | 73.33 | 73.61 |
| TraesCS2B01G174800.1 | Wheat | cytosol | 73.33 | 73.61 |
| TraesCS2D01G154800.1 | Wheat | cytosol | 72.96 | 73.23 |
| TraesCS2A01G149700.1 | Wheat | cytosol | 72.59 | 72.86 |
| Os07t0637400-01 | Rice | plasma membrane | 71.11 | 72.18 |
| EER92219 | Sorghum | cytosol | 72.22 | 71.43 |
| Zm00001d029281_P007 | Maize | extracellular, plasma membrane | 72.59 | 71.27 |
| Os03t0369800-01 | Rice | plasma membrane | 71.48 | 70.18 |
| TraesCS4B01G157900.2 | Wheat | cytosol | 70.37 | 69.6 |
| TraesCS4D01G161700.1 | Wheat | cytosol | 70.37 | 69.6 |
| TraesCS4A01G162300.1 | Wheat | cytosol | 69.63 | 68.86 |
| Solyc08g077550.2.1 | Tomato | plastid | 65.93 | 68.2 |
| CDX77329 | Canola | cytosol | 51.48 | 61.23 |
| CDY53169 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 27.41 | 57.81 |
| HORVU2Hr1G026870.4 | Barley | plastid | 57.78 | 56.93 |
| CDY41849 | Canola | cytosol | 31.85 | 56.21 |
| Bra014118.1-P | Field mustard | cytosol | 31.85 | 56.21 |
| CDY41852 | Canola | cytosol | 31.11 | 54.9 |
| GSMUA_Achr2P07960_001 | Banana | cytosol | 20.37 | 53.92 |
| GSMUA_Achr2P07950_001 | Banana | cytosol | 7.78 | 52.5 |
| HORVU1Hr1G069840.13 | Barley | extracellular | 16.67 | 21.84 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.2.4 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006623 |
| GO:GO:0006810 | GO:GO:0006888 | GO:GO:0006891 | GO:GO:0006896 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0012507 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 | GO:GO:0031902 |
| GO:GO:0042147 | GO:GO:0048280 | InterPro:IPR000727 | UniProt:K4DHR8 | PFAM:PF03908 | PFscan:PS50192 |
| PANTHER:PTHR21230 | PANTHER:PTHR21230:SF35 | SMART:SM00397 | SUPFAM:SSF58038 | InterPro:Sec20 | EnsemblPlantsGene:Solyc12g098950.1 |
| EnsemblPlants:Solyc12g098950.1.1 | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000276A527 | SEG:seg | : |
Description
No Description!
Coordinates
chr12:+:66291371..66297412
Molecular Weight (calculated)
30476.9 Da
IEP (calculated)
6.943
GRAVY (calculated)
-0.528
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLDLQMNP QMEQIHGEIR DNFRALANGF QKLDKIKDSN RQSKQLEELT GKMRECKRLV KEFDREIKDE ESKSPPEVNK QLNDEKQSMI KELNSYVALR
101: KTYMSSLGNK RVELFDMGAG GSEPTAEENV QMASEMSNQE LISAGNKTMD ETDQAIERSK QVVHQTIEVG TQTAATLKGQ TDQMGRVVNE LDTIHFSIKK
201: ASQLVKEIGR QVATDKCIML FLFLIVCGVV AIIVVKIVNP HNKDIRDIPG LAPPAPARRL LYLRPGQDFM
101: KTYMSSLGNK RVELFDMGAG GSEPTAEENV QMASEMSNQE LISAGNKTMD ETDQAIERSK QVVHQTIEVG TQTAATLKGQ TDQMGRVVNE LDTIHFSIKK
201: ASQLVKEIGR QVATDKCIML FLFLIVCGVV AIIVVKIVNP HNKDIRDIPG LAPPAPARRL LYLRPGQDFM
001: MASNLPMSPQ LEQIHGEIRD HFRALANGFQ RLDKIKDSTR QSKQLEELTD KMRECKRLVK EFDRELKDEE ARNSPEVNKQ LNDEKQSMIK ELNSYVALRK
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
101: TYMSTLGNKK VELFDMGAGV SGEPTAEENV QVASSMSNQE LVDAGMKRMD ETDQAIERSK QVVEQTLEVG TQTAANLKGQ TDQMGRVVNH LDTIQFSIKK
201: ASQLVKEIGR QVATDKCIMG FLFLIVCGVV AIIIVKIVNP NNKDIRDIPG LAPPAQSRKL LYLRNQDYM
Arabidopsis Description
NPSN13Novel plant SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.