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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, plastid, secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d038803_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G21690.1 Zm00001d008871_P001 AT3G16310.1 21798944
AT3G21690.1 Zm00001d010783_P001 AT3G16310.1 21798944
AT3G21690.1 Zm00001d038803_P001 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG38133 Sorghum cytosol, peroxisome, vacuole 89.67 89.15
Zm00001d013810_P001 Maize cytosol, mitochondrion, peroxisome, plasma membrane 87.13 84.66
Os03t0571900-01 Rice plasma membrane 85.77 84.62
TraesCS5D01G332300.1 Wheat cytosol, peroxisome, plasma membrane 83.63 84.28
TraesCS5B01G326600.1 Wheat cytosol, peroxisome, plasma membrane 83.63 83.79
HORVU5Hr1G082890.5 Barley cytosol, peroxisome, plasma membrane 82.65 83.46
Zm00001d033061_P002 Maize cytosol, plasma membrane, vacuole 72.12 75.05
CDY33131 Canola golgi, plasma membrane, vacuole 25.73 75.0
TraesCS1D01G030400.1 Wheat cytosol, peroxisome, plasma membrane 74.66 74.8
Zm00001d033063_P001 Maize vacuole 72.9 74.8
TraesCS1B01G037000.1 Wheat cytosol, peroxisome, vacuole 74.46 74.46
TraesCS1A01G029900.1 Wheat cytosol, peroxisome, plasma membrane 74.27 74.27
Zm00001d013809_P002 Maize plasma membrane 71.54 73.84
Bra001840.1-P Field mustard plasma membrane 64.72 72.65
KRH26788 Soybean plasma membrane 70.76 72.02
Bra031296.1-P Field mustard cytosol, peroxisome, plasma membrane 70.76 71.88
CDY33129 Canola cytosol, peroxisome, plasma membrane 70.76 71.88
CDX92916 Canola cytosol, plasma membrane, vacuole 70.57 71.68
CDY69153 Canola cytosol, peroxisome, plasma membrane 44.25 71.61
AT3G21690.1 Thale cress cytosol, peroxisome, plasma membrane 70.57 71.54
Bra031297.1-P Field mustard cytosol, peroxisome, vacuole 69.4 71.34
Solyc07g052380.2.1 Tomato cytosol, peroxisome, plasma membrane 69.59 70.97
CDY24250 Canola cytosol, peroxisome, plasma membrane 43.66 70.66
VIT_12s0059g02220.t01 Wine grape cytosol, peroxisome, plasma membrane, plastid 69.79 70.61
TraesCS5A01G326700.1 Wheat cytosol, peroxisome, plasma membrane 70.18 70.59
CDY38631 Canola cytosol, peroxisome, vacuole 70.37 70.51
VIT_12s0059g02180.t01 Wine grape cytosol, peroxisome, plasma membrane 69.59 70.41
PGSC0003DMT400065544 Potato cytosol, peroxisome, plasma membrane 66.28 70.25
TraesCS5A01G326300.4 Wheat cytosol, plasma membrane, vacuole 77.97 70.18
Zm00001d013811_P001 Maize cytosol, peroxisome, plasma membrane 69.01 69.96
TraesCS3B01G485100.1 Wheat plasma membrane 74.85 69.69
CDY39494 Canola cytosol, peroxisome, plasma membrane 69.79 69.65
KRH56125 Soybean plasma membrane 70.18 69.63
Bra023866.1-P Field mustard cytosol, peroxisome, plasma membrane 66.08 69.61
Zm00001d021629_P003 Maize plasma membrane 69.59 69.59
CDY19294 Canola cytosol, peroxisome, plasma membrane 69.4 69.26
CDY39493 Canola cytosol, peroxisome, plasma membrane 67.84 69.18
CDY65669 Canola cytosol, peroxisome, plasma membrane 66.67 69.09
CDY33130 Canola cytosol, peroxisome, vacuole 41.13 68.51
Solyc12g005850.1.1 Tomato plasma membrane 68.03 68.16
VIT_12s0059g02160.t01 Wine grape plasma membrane 68.23 67.96
Bra023867.1-P Field mustard cytosol, peroxisome, plasma membrane 65.89 67.6
CDY19295 Canola cytosol, peroxisome, plasma membrane 39.57 66.78
KRH25385 Soybean plasma membrane 56.92 66.21
Zm00001d006493_P001 Maize plasma membrane 69.2 62.28
PGSC0003DMT400022543 Potato plasma membrane 63.35 62.02
Zm00001d006494_P004 Maize plasma membrane 64.72 58.55
VIT_12s0059g02230.t01 Wine grape cytosol, nucleus, plasma membrane 66.28 49.42
Zm00001d027982_P002 Maize cytosol, peroxisome, plasma membrane 44.05 46.5
Zm00001d053234_P001 Maize peroxisome 44.83 45.45
Zm00001d050457_P002 Maize plasma membrane 41.52 44.1
Zm00001d033296_P002 Maize plasma membrane 42.5 44.04
Zm00001d012663_P001 Maize mitochondrion 43.47 43.64
Zm00001d005018_P001 Maize cytosol, peroxisome, plasma membrane 42.69 42.12
Zm00001d023277_P001 Maize cytosol, peroxisome, plasma membrane 42.69 41.09
Zm00001d030250_P001 Maize peroxisome 38.6 37.93
Zm00001d049910_P001 Maize cytosol, peroxisome, plasma membrane 39.18 33.78
Zm00001d051886_P001 Maize cytosol, peroxisome, plasma membrane 43.08 31.94
Protein Annotations
MapMan:24.2.4.1.1UniProt:A0A1D6KW49ncoils:CoilGO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0006855GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020
GO:GO:0016021GO:GO:0055085InterPro:MATE_famProteinID:ONM06704.1PFAM:PF01554PANTHER:PTHR11206
PANTHER:PTHR11206:SF200TIGRFAMs:TIGR00797TMHMM:TMhelixUniParc:UPI000220D1C4EnsemblPlantsGene:Zm00001d033062EnsemblPlants:Zm00001d033062_P001
EnsemblPlants:Zm00001d033062_T001SEG:seg::::
Description
Transparent testa 12 protein
Coordinates
chr1:-:249131104..249134119
Molecular Weight (calculated)
54866.9 Da
IEP (calculated)
6.652
GRAVY (calculated)
0.747
Length
513 amino acids
Sequence
(BLAST)
001: MMSSTGGESK LESPLLGLPA PGSSAGSGHS HGEAVSGQLE SILSDASLPW RRRMLSASMV EMRLLVRLAA PAVLVYMINY LMSMSTQIFS GHLGTLELAA
101: ASLGNTGIQV FAYGLMLGMG SAVETLCGQA YGAHKYDMLG IYLQRSTILL MATGVPLTVL YAFSRPILVL LGESPEIASA AAVFVYGLIP QIFAYAANFP
201: IQKFMQAQSI MAPSAYISAA TLAVHLALSY LVVYQFGLGL LGASLMLSVS WWVIVAAQFA YIATSQRCRL TWTGFSWEAF SGLPGFLKLS LASAVMLCLE
301: TWYFQILVLI AGLLKDPELA LASLSVCMSI TGWVFMISVG FNAAASVRVS NELGAGNPKS AAFSVVVVTL LSFVLSVIIS IVILLCRDYI SYIFTEGDDV
401: SRAVAQLSPL LAVTLILNGI QPVLSGVAVG CGWQALVAYV NVGCYYIVGI PLGCLLGFYF DLGAAGIWSG MIGGTLMQTM ILVWVTFRTN WNKEVEEAQK
501: RLNKWEDSKA PVQ
Best Arabidopsis Sequence Match ( AT3G21690.1 )
(BLAST)
001: MDSSPNDGVH QPLLHPQPSP SPPESTNGEL ETVLSDVETP LFLRLRKATI IESKLLFNLA APAVIVYMIN YLMSMSTQIF SGHLGNLELA AASLGNTGIQ
101: VFAYGLMLGM GSAVETLCGQ AYGGRKYEML GVYLQRSTVL LTLTGLLLTL IYVFSEPILL FLGESPAIAS AASLFVYGLI PQIFAYAANF PIQKFLQSQS
201: IVAPSAYIST ATLFVHLLLS WLAVYKLGMG LLGASLVLSL SWWIIVVAQF VYIVTSERCR ETWRGFSVQA FSGLWSFFKL SAASAVMLCL ETWYFQILVL
301: LAGLLENPEL ALDSLSICMT ISGWVFMISV GFNAAISVRV SNELGAGNPK SAAFSVIIVN IYSLITCVIL AIVILACRDV LSYAFTEGKE VSDAVSDLCP
401: LLAVTLVLNG IQPVLSGVAV GCGWQTFVAK VNVGCYYIIG IPLGALFGFY FNFGAKGIWT GMIGGTVIQT FILAWVTFRT DWTKEVEEAS KRLDKWSNKK
501: QEVVPE
Arabidopsis Description
DTX40Protein DETOXIFICATION 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.