Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 65.81 | 87.93 |
| TraesCS6D01G224100.1 | Wheat | cytosol, golgi, plasma membrane | 65.81 | 87.93 |
| TraesCS6A01G242200.1 | Wheat | cytosol, golgi, plasma membrane | 65.16 | 87.07 |
| Os10t0549100-01 | Rice | plasma membrane | 64.84 | 86.27 |
| Zm00001d051329_P002 | Maize | mitochondrion, plasma membrane, plastid | 79.35 | 81.46 |
| EES05798 | Sorghum | plastid | 84.19 | 80.56 |
| Os02t0652550-00 | Rice | cytosol | 67.74 | 78.65 |
| HORVU6Hr1G062050.9 | Barley | mitochondrion | 72.26 | 76.98 |
| GSMUA_Achr11P... | Banana | cytosol | 52.58 | 70.87 |
| Zm00001d014260_P001 | Maize | plastid | 40.65 | 70.79 |
| GSMUA_Achr5P18320_001 | Banana | cytosol, nucleus, plasma membrane | 52.26 | 69.53 |
| KRH04206 | Soybean | cytosol | 41.61 | 58.11 |
| KRH28185 | Soybean | cytosol, golgi, nucleus | 40.97 | 57.99 |
| KRH57501 | Soybean | plasma membrane | 39.03 | 57.35 |
| PGSC0003DMT400067515 | Potato | nucleus | 40.0 | 56.36 |
| Solyc08g078000.2.1 | Tomato | nucleus | 39.35 | 55.45 |
| AT5G47180.1 | Thale cress | cytosol | 39.03 | 55.0 |
| CDY40565 | Canola | cytosol | 38.06 | 54.13 |
| CDY28969 | Canola | cytosol | 38.06 | 54.13 |
| Bra022110.1-P | Field mustard | cytosol | 38.06 | 54.13 |
| Bra022111.1-P | Field mustard | cytosol | 38.39 | 54.09 |
| CDY43438 | Canola | cytosol | 38.06 | 53.64 |
| PGSC0003DMT400052797 | Potato | cytosol | 37.1 | 53.49 |
| Solyc08g007200.2.1 | Tomato | unclear | 37.1 | 53.49 |
| CDY33519 | Canola | cytosol | 37.42 | 53.21 |
| CDX77746 | Canola | cytosol | 37.42 | 53.21 |
| Bra017499.1-P | Field mustard | cytosol | 37.74 | 53.18 |
| CDY25982 | Canola | cytosol | 37.74 | 53.18 |
| Bra024958.1-P | Field mustard | cytosol | 36.77 | 52.29 |
| KRH77304 | Soybean | plasma membrane, vacuole | 41.29 | 51.41 |
| Zm00001d051288_P001 | Maize | cytosol | 29.03 | 40.0 |
| Zm00001d017390_P001 | Maize | cytosol | 28.71 | 39.56 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 29.35 | 37.76 |
| Zm00001d049553_P001 | Maize | plasma membrane | 27.42 | 34.84 |
| Zm00001d032507_P001 | Maize | cytosol, golgi, plasma membrane | 28.39 | 32.47 |
| Zm00001d051383_P001 | Maize | cytosol, plastid | 27.1 | 31.94 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 30.0 | 31.21 |
| Zm00001d036342_P001 | Maize | cytosol | 23.55 | 29.2 |
| VIT_00s0287g00080.t01 | Wine grape | extracellular | 27.1 | 24.14 |
| Zm00001d010495_P002 | Maize | cytosol | 27.42 | 22.37 |
| Zm00001d011904_P001 | Maize | cytosol | 28.06 | 22.25 |
| Zm00001d042180_P002 | Maize | cytosol | 27.42 | 21.2 |
| Zm00001d048612_P001 | Maize | cytosol | 13.87 | 6.07 |
Protein Annotations
| EntrezGene:100217229 | Gene3D:2.60.40.10 | MapMan:20.7.1 | UniProt:A0A1D6HEU8 | ProteinID:AQK73169.1 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom |
| PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF42 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0008424F3F | InterPro:VAP | EnsemblPlantsGene:Zm00001d017448 | EnsemblPlants:Zm00001d017448_P001 |
| EnsemblPlants:Zm00001d017448_T001 | SEG:seg | : | : | : | : |
Description
Vesicle-associated protein 2-1
Coordinates
chr5:-:196097028..196100243
Molecular Weight (calculated)
34326.7 Da
IEP (calculated)
8.034
GRAVY (calculated)
-0.138
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLGAKKSKA KQTADPLVSL FPPPLPTSPN RRLLLIYLFC LQLVFGKQGS ESVGAMGGSG TLISVYPEEL TFLFELEKPC YCNLKVVNNS EHHVAFKVKT
101: TSPRKYFVRP NASIVQPWDS CTITITLQAQ KDYPPDMQCK DKFLIQSTKV AASTDMDEIP PDTFNKEADK VIEEMKLKVV YTLPSCGGSD DSSVSSLGSR
201: SFKAASDDLM MLKNASLEEV LFHEGISLQQ EVCALALIKT IQTIQRLKEE RDNMLQQNQQ MQRELDVLRR RRSRKGDAGF SLTFAAFAGL IGLMVGLLMS
301: LIFSSAPADA
101: TSPRKYFVRP NASIVQPWDS CTITITLQAQ KDYPPDMQCK DKFLIQSTKV AASTDMDEIP PDTFNKEADK VIEEMKLKVV YTLPSCGGSD DSSVSSLGSR
201: SFKAASDDLM MLKNASLEEV LFHEGISLQQ EVCALALIKT IQTIQRLKEE RDNMLQQNQQ MQRELDVLRR RRSRKGDAGF SLTFAAFAGL IGLMVGLLMS
301: LIFSSAPADA
001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
Arabidopsis Description
PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.