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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • nucleus 3
  • endoplasmic reticulum 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:endoplasmic reticulum
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400052797 Potato cytosol 99.07 99.07
Solyc08g078000.2.1 Tomato nucleus 77.21 75.45
KRH28185 Soybean cytosol, golgi, nucleus 66.51 65.3
KRH57501 Soybean plasma membrane 60.47 61.61
CDY40565 Canola cytosol 62.33 61.47
CDY28969 Canola cytosol 62.33 61.47
Bra017499.1-P Field mustard cytosol 62.79 61.36
CDY43438 Canola cytosol 62.79 61.36
CDY33519 Canola cytosol 61.86 61.01
CDX77746 Canola cytosol 61.86 61.01
Bra022110.1-P Field mustard cytosol 61.86 61.01
CDY25982 Canola cytosol 62.33 60.91
Bra022111.1-P Field mustard cytosol 62.33 60.91
KRH04206 Soybean cytosol 62.79 60.81
Bra024958.1-P Field mustard cytosol 60.47 59.63
AT5G47180.1 Thale cress cytosol 60.93 59.55
KRH77304 Soybean plasma membrane, vacuole 66.05 57.03
GSMUA_Achr11P... Banana cytosol 57.21 53.48
TraesCS6D01G224100.1 Wheat cytosol, golgi, plasma membrane 53.95 50.0
TraesCS6B01G282300.1 Wheat cytosol, golgi, plasma membrane 53.95 50.0
TraesCS6A01G242200.1 Wheat cytosol, golgi, plasma membrane 53.95 50.0
GSMUA_Achr5P18320_001 Banana cytosol, nucleus, plasma membrane 53.49 49.36
Os10t0549100-01 Rice plasma membrane 51.63 47.64
Os02t0652550-00 Rice cytosol 54.88 44.19
HORVU6Hr1G062050.9 Barley mitochondrion 55.35 40.89
Solyc08g078690.2.1 Tomato cytosol 41.86 40.54
Solyc01g090910.2.1 Tomato nucleus 42.79 39.48
Solyc01g090990.2.1 Tomato nucleus, plastid, unclear 43.72 39.17
Zm00001d051329_P002 Maize mitochondrion, plasma membrane, plastid 54.42 38.74
Zm00001d017448_P001 Maize endoplasmic reticulum, golgi, plastid 53.49 37.1
Zm00001d014260_P001 Maize plastid 30.7 37.08
Solyc06g034220.2.1 Tomato nucleus 38.6 36.56
Solyc10g018350.1.1 Tomato cytosol 39.53 35.71
EES05798 Sorghum plastid 53.02 35.19
Solyc08g007390.2.1 Tomato unclear 29.3 31.34
VIT_00s0287g00080.t01 Wine grape extracellular 44.19 27.3
TraesCS2B01G214400.1 Wheat mitochondrion 30.7 24.63
Solyc01g098200.2.1 Tomato cytosol 35.81 24.37
Solyc01g067720.2.1 Tomato plastid 39.07 20.29
Protein Annotations
Gene3D:2.60.40.10MapMan:20.7.1ncoils:CoilGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR000535
InterPro:IPR013783InterPro:Ig-like_foldUniProt:K4CIK7InterPro:MSP_domPFAM:PF00635PIRSF:PIRSF019693
PFscan:PS50202PANTHER:PTHR10809PANTHER:PTHR10809:SF42InterPro:PapD-like_sfSUPFAM:SSF49354EnsemblPlantsGene:Solyc08g007200.2
EnsemblPlants:Solyc08g007200.2.1TMHMM:TMhelixUniParc:UPI000276C443InterPro:VAP::
Description
No Description!
Coordinates
chr8:-:1768260..1774340
Molecular Weight (calculated)
24317.0 Da
IEP (calculated)
8.303
GRAVY (calculated)
-0.463
Length
215 amino acids
Sequence
(BLAST)
001: MSSGATNQLI SVSPPELKFQ FELDKQSYCD LKVTNSTDQC VAFKVKTTSP KKYFVRPNTG IIQPWDSGFI RVTLQAQKEY PADMQCKDKF LLQSAIVNND
101: TDELPPDTFN KDGGRTVEEC KLRVVYMSSH SSPGPYEDVF RQSSDFSSNQ ALQRIKDERD AAVRQTQQLI QDLEMMKRRR SRNDPGFSLR FAIVVGVIGL
201: MVGFLLKLLS SPSVE
Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)
001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
Arabidopsis Description
PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.