Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 4
- golgi 2
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
26455813
|
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g078690.2.1 | Tomato | cytosol | 57.71 | 52.25 |
| Solyc01g090910.2.1 | Tomato | nucleus | 53.23 | 45.92 |
| VIT_15s0048g00600.t01 | Wine grape | cytosol, nucleus, plasma membrane | 53.23 | 44.77 |
| Solyc10g018350.1.1 | Tomato | cytosol | 52.24 | 44.12 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 50.75 | 42.5 |
| GSMUA_Achr1P20230_001 | Banana | cytosol | 47.76 | 40.51 |
| TraesCS7D01G296900.1 | Wheat | cytosol, golgi, plasma membrane | 47.76 | 40.34 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 47.26 | 39.92 |
| TraesCS7A01G301500.1 | Wheat | cytosol, golgi, plasma membrane | 46.77 | 39.5 |
| TraesCS7B01G201800.1 | Wheat | cytosol, golgi, plasma membrane | 46.27 | 39.08 |
| GSMUA_Achr1P04220_001 | Banana | cytosol, nucleus, plasma membrane | 45.27 | 38.24 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 45.27 | 37.76 |
| GSMUA_Achr7P07100_001 | Banana | cytosol | 43.78 | 36.97 |
| KXG24454 | Sorghum | cytosol | 44.28 | 36.93 |
| GSMUA_Achr6P36770_001 | Banana | cytosol | 37.81 | 36.36 |
| Os08t0155100-01 | Rice | plasma membrane | 42.79 | 36.29 |
| GSMUA_Achr1P05960_001 | Banana | cytosol, golgi, plasma membrane | 41.29 | 34.58 |
| Solyc06g034220.2.1 | Tomato | nucleus | 37.31 | 33.04 |
| GSMUA_Achr7P06650_001 | Banana | cytosol | 34.33 | 31.94 |
| TraesCS6B01G277000.1 | Wheat | cytosol | 34.83 | 29.91 |
| HORVU6Hr1G063580.1 | Barley | cytosol | 34.83 | 29.91 |
| TraesCS6D01G229800.1 | Wheat | cytosol | 34.33 | 29.49 |
| TraesCS6A01G247700.1 | Wheat | cytosol | 34.33 | 29.49 |
| Solyc08g007200.2.1 | Tomato | unclear | 31.34 | 29.3 |
| Solyc08g078000.2.1 | Tomato | nucleus | 30.35 | 27.73 |
| Os02t0661900-02 | Rice | cytosol | 13.93 | 26.42 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 31.84 | 26.23 |
| KXG26858 | Sorghum | cytosol, plastid | 31.84 | 26.23 |
| TraesCS2B01G430600.1 | Wheat | cytosol, plastid | 30.85 | 25.62 |
| TraesCS2D01G409200.1 | Wheat | cytosol, plastid | 30.85 | 25.62 |
| EES07504 | Sorghum | plastid | 32.84 | 24.81 |
| TraesCS2A01G412000.1 | Wheat | cytosol, plastid | 29.85 | 24.79 |
| Zm00001d051383_P001 | Maize | cytosol, plastid | 32.34 | 24.71 |
| HORVU2Hr1G097220.19 | Barley | plastid | 25.87 | 21.05 |
| Solyc01g098200.2.1 | Tomato | cytosol | 30.85 | 19.62 |
| Solyc01g067720.2.1 | Tomato | plastid | 32.34 | 15.7 |
Protein Annotations
| EnsemblPlants:Solyc08g007390.2.1 | EnsemblPlantsGene:Solyc08g007390.2 | Gene3D:2.60.40.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:PapD-like_sf | InterPro:VAP | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | SEG:seg |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI000276C630 | UniProt:K4CIM6 | MapMan:20.7.1 | : |
Description
No Description!
Coordinates
chr8:+:1966161..1970143
Molecular Weight (calculated)
22649.6 Da
IEP (calculated)
9.761
GRAVY (calculated)
-0.351
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHLRLKRRT RKSIVFVRIQ ALFCLDPLVM LSWLTMQAQK EAPADMQCKD KFLLQSVVAS AVTNPKDITQ EMFNKEPGRV VEECKLKVIY LPPPQPPSPV
101: AEGSEEGSSP RQSLTENDNQ NGSELTRTFL ETHDKSTEAK SLIYRLTEEK AGALHQSNRL RQELEIMRRD ISKSRSGGVS FKFVIVLGLI GVVMGYILKS
201: S
101: AEGSEEGSSP RQSLTENDNQ NGSELTRTFL ETHDKSTEAK SLIYRLTEEK AGALHQSNRL RQELEIMRRD ISKSRSGGVS FKFVIVLGLI GVVMGYILKS
201: S
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.