Factsheet for Solyc01g090990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066797	Potato	cytosol	98.33	98.33
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	72.08	72.38
GSMUA_Achr1P20230_001	Banana	cytosol	66.25	67.09
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	66.25	66.53
CDX91914	Canola	cytosol	64.17	65.25
Bra000978.1-P	Field mustard	cytosol	64.17	65.25
CDX74330	Canola	cytosol	63.33	64.41
GSMUA_Achr6P36770_001	Banana	cytosol	53.75	61.72
Solyc01g090910.2.1	Tomato	nucleus	58.75	60.52
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	60.0	60.5
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	60.0	60.5
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	60.42	60.17
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	59.58	60.08
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	59.58	60.08
KXG24454	Sorghum	cytosol	59.58	59.34
GSMUA_Achr7P07100_001	Banana	cytosol	58.75	59.24
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	58.75	59.24
Solyc08g078690.2.1	Tomato	cytosol	54.58	59.01
Os08t0155100-01	Rice	plasma membrane	57.92	58.65
GSMUA_Achr7P06650_001	Banana	cytosol	52.08	57.87
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	56.67	56.67
Solyc10g018350.1.1	Tomato	cytosol	55.42	55.88
Os02t0661900-02	Rice	cytosol	24.17	54.72
Solyc08g007390.2.1	Tomato	unclear	42.5	50.75
Solyc06g034220.2.1	Tomato	nucleus	47.08	49.78
TraesCS6D01G229800.1	Wheat	cytosol	46.25	47.44
TraesCS6B01G277000.1	Wheat	cytosol	46.25	47.44
TraesCS6A01G247700.1	Wheat	cytosol	46.25	47.44
TraesCS2D01G409200.1	Wheat	cytosol, plastid	47.5	47.11
TraesCS2B01G430600.1	Wheat	cytosol, plastid	47.5	47.11
HORVU6Hr1G063580.1	Barley	cytosol	45.83	47.01
TraesCS2A01G412000.1	Wheat	cytosol, plastid	46.67	46.28
Os04t0554200-02	Rice	cytosol, nucleus, plastid	45.83	45.08
Solyc08g078000.2.1	Tomato	nucleus	40.83	44.55
Solyc08g007200.2.1	Tomato	unclear	39.17	43.72
KXG26858	Sorghum	cytosol, plastid	44.17	43.44
HORVU2Hr1G097220.19	Barley	plastid	43.75	42.51
EES07504	Sorghum	plastid	43.75	39.47
Zm00001d051383_P001	Maize	cytosol, plastid	42.08	38.4
Solyc01g098200.2.1	Tomato	cytosol	38.33	29.11
Solyc01g067720.2.1	Tomato	plastid	43.75	25.36

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:K4AZ39	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43	InterPro:PapD-like_sf	SUPFAM:SSF49354	EnsemblPlantsGene:Solyc01g090990.2
EnsemblPlants:Solyc01g090990.2.1	TMHMM:TMhelix	UniParc:UPI0002767FF4	InterPro:VAP	SEG:seg	:

Description

Vesicle-associated protein 1-3 [Source:Projected from Arabidopsis thaliana (AT4G00170) UniProtKB/Swiss-Prot;Acc:Q84WW5]

Coordinates

chr1:-:84681372..84688000

Molecular Weight (calculated)

26380.6 Da

IEP (calculated)

8.594

GRAVY (calculated)

-0.425

Length

240 amino acids

Sequence
(BLAST)

001: MTTGEFINIY PTELKFQFEL RKQSSCSMQL SNKTDQYIAF KVKTTNPKKY CVRPNAGVVL PGSSCNVTVT MQGQKEAPPD MQCKDKFLIQ SAIAPTGTTN
101: KDVTPEIFNR EDGKVIDEFK LRVVYVPANP PSPVPEGSEE GGSPRTSLTE DDSKSTSLPE AVSRSLEESK AKSSPSEAWS LISRLTDEKA SALQQNQKLR
201: QELELVRKEI NKSNAGGVSM LFVVLIGVIG LLVGYLIKKT

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.