Factsheet for HORVU0Hr1G021390.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 1
plasma membrane 2
plastid 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	95.38	95.38
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	94.96	94.96
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	94.54	94.54
Os08t0155100-01	Rice	plasma membrane	78.99	79.32
KXG24454	Sorghum	cytosol	79.41	78.42
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	78.99	78.01
GSMUA_Achr1P20230_001	Banana	cytosol	68.07	68.35
GSMUA_Achr6P36770_001	Banana	cytosol	56.3	64.11
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	62.18	61.92
GSMUA_Achr7P06650_001	Banana	cytosol	55.04	60.65
PGSC0003DMT400066797	Potato	cytosol	59.66	59.17
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	59.24	58.75
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	59.24	58.75
Bra000978.1-P	Field mustard	cytosol	55.46	55.93
CDX91914	Canola	cytosol	55.46	55.93
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	55.46	55.23
CDX74330	Canola	cytosol	54.62	55.08
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	51.68	53.95
HORVU2Hr1G091830.4	Barley	cytosol	52.94	50.6
Solyc08g007390.2.1	Tomato	unclear	39.92	47.26
HORVU7Hr1G071270.2	Barley	mitochondrion	56.3	45.42
HORVU6Hr1G063580.1	Barley	cytosol	41.6	42.31
HORVU2Hr1G097220.19	Barley	plastid	37.4	36.03
HORVU6Hr1G062050.9	Barley	mitochondrion	36.13	29.55
HORVU3Hr1G099730.5	Barley	cytosol	44.96	28.46
HORVU2Hr1G003640.7	Barley	cytosol	20.17	22.86
HORVU3Hr1G006600.1	Barley	cytosol	22.27	7.45
HORVU5Hr1G012420.3	Barley	nucleus	21.43	5.17
HORVU6Hr1G011350.2	Barley	cytosol	1.26	0.24

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	EnsemblPlantsGene:HORVU0Hr1G021390	EnsemblPlants:HORVU0Hr1G021390.2
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0Y3J2	InterPro:MSP_dom	PFAM:PF00635
PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43	InterPro:PapD-like_sf	SUPFAM:SSF49354
TMHMM:TMhelix	UniParc:UPI000294DE4C	InterPro:VAP	SEG:seg	:	:

Description

No Description!

Coordinates

chrchrUn:-:112223248..112228130

Molecular Weight (calculated)

25875.0 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.271

Length

238 amino acids

Sequence
(BLAST)

001: MSAGSASFLE IQPSELAFPF ELMKQSSCSM QLTNKTDHYV AFKVKTTNPK QYCVRPNIGV VLPGSTCDVT VTMQAQREAP PDLQCKDKFL VQSVAAENGA
101: ATQDITAAMF NKEPGKVVDE CKLRVIYVPT STPSSLSEES EQGSSARSFE NGTPNSTMPQ SVFRPSGELS KDKSLEATSM ISKLTEEKMS AVQQNQKLRQ
201: ELDVLRKESS KSNGGFSITF LIVVGILGII AGFILKKT

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.