CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74330	Canola	cytosol	98.31	98.31
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	85.59	84.52
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	68.64	67.78
PGSC0003DMT400066797	Potato	cytosol	66.1	65.0
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	65.25	64.17
GSMUA_Achr1P20230_001	Banana	cytosol	63.14	62.87
Os02t0661900-02	Rice	cytosol	27.12	60.38
CDY27392	Canola	cytosol, golgi, plasma membrane	59.32	58.58
CDY37029	Canola	cytosol, golgi, plasma membrane	59.32	58.58
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	58.9	58.4
CDY56247	Canola	cytosol	58.9	57.92
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	58.9	57.68
CDY57247	Canola	cytosol	58.05	57.08
Os08t0155100-01	Rice	plasma membrane	57.2	56.96
KXG24454	Sorghum	cytosol	58.05	56.85
GSMUA_Achr7P07100_001	Banana	cytosol	57.2	56.72
CDY41153	Canola	cytosol	57.2	56.72
CDX71796	Canola	cytosol	57.2	56.72
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	57.2	56.72
GSMUA_Achr7P06650_001	Banana	cytosol	51.69	56.48
GSMUA_Achr6P36770_001	Banana	cytosol	50.0	56.46
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	56.78	56.3
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	56.78	56.3
CDX67837	Canola	cytosol, golgi, plasma membrane	57.2	56.25
CDY48365	Canola	cytosol	56.78	56.07
CDX89063	Canola	cytosol, golgi, plasma membrane	56.78	56.07
CDX83400	Canola	cytosol, nucleus, plasma membrane	57.2	56.02
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	55.93	55.46
CDX95631	Canola	cytosol, golgi, plasma membrane	56.36	55.19
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	54.24	53.33
TraesCS6B01G277000.1	Wheat	cytosol	47.88	48.29
TraesCS6A01G247700.1	Wheat	cytosol	47.88	48.29
TraesCS6D01G229800.1	Wheat	cytosol	47.88	48.29
HORVU6Hr1G063580.1	Barley	cytosol	47.88	48.29
CDY28969	Canola	cytosol	44.07	47.71
CDY40565	Canola	cytosol	44.07	47.71
Os04t0554200-02	Rice	cytosol, nucleus, plastid	49.15	47.54
KXG26858	Sorghum	cytosol, plastid	48.31	46.72
CDX77746	Canola	cytosol	42.8	46.33
CDY33519	Canola	cytosol	42.8	46.33
TraesCS2D01G409200.1	Wheat	cytosol, plastid	47.46	46.28
TraesCS2B01G430600.1	Wheat	cytosol, plastid	47.03	45.87
CDY43438	Canola	cytosol	42.37	45.45
TraesCS2A01G412000.1	Wheat	cytosol, plastid	46.61	45.45
CDY25982	Canola	cytosol	41.95	45.0
HORVU2Hr1G097220.19	Barley	plastid	43.22	41.3
EES07504	Sorghum	plastid	45.76	40.6
Zm00001d051383_P001	Maize	cytosol, plastid	44.92	40.3
CDY44556	Canola	cytosol, extracellular, plastid	15.68	36.27
CDY06330	Canola	cytosol	42.8	29.45
CDX93534	Canola	cytosol	42.8	27.22
CDX95029	Canola	cytosol	42.37	26.74
CDY31124	Canola	cytosol	41.53	25.72
CDY32136	Canola	cytosol	41.1	25.53
CDY22664	Canola	plasma membrane	43.22	24.06

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	GO:A0A078DTV0	EnsemblPlants:CDX91914	ProteinID:CDX91914	ProteinID:CDX91914.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00153543001	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0004EF2791	InterPro:VAP	SEG:seg

Description

BnaC03g32160D

Coordinates

chrLK031870:+:787881..789498

Molecular Weight (calculated)

26174.4 Da

IEP (calculated)

7.373

GRAVY (calculated)

-0.380

Length

236 amino acids

Sequence
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSLQI SNKTSTQVVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QSVIVSDATT
101: SKDVIAEMFN KEPGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPRTDFP ASQFDDHVSR TLEETNEKSS EAWSMIHKLT EEKACAVQQS QKLRQELEML
201: RRESSNKQSG GGHSLVLMLL VGLLGCVIGY ILNVRT

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.