CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06330	Canola	cytosol	78.07	96.5
CDX93534	Canola	cytosol	64.39	73.58
CDX95029	Canola	cytosol	64.62	73.26
CDY32136	Canola	cytosol	65.57	73.16
CDY31124	Canola	cytosol	64.86	72.18
AT1G08820.3	Thale cress	cytosol	62.5	68.65
VIT_14s0030g00730.t01	Wine grape	cytosol	34.91	44.05
CDX74330	Canola	cytosol	24.06	43.22
CDX91914	Canola	cytosol	24.06	43.22
CDY41153	Canola	cytosol	23.82	42.44
CDX71796	Canola	cytosol	23.82	42.44
CDY37029	Canola	cytosol, golgi, plasma membrane	23.82	42.26
CDY48365	Canola	cytosol	23.82	42.26
CDX89063	Canola	cytosol, golgi, plasma membrane	23.82	42.26
GSMUA_Achr8P21990_001	Banana	cytosol	29.95	42.19
CDX95631	Canola	cytosol, golgi, plasma membrane	23.82	41.91
CDY27392	Canola	cytosol, golgi, plasma membrane	23.58	41.84
CDY56247	Canola	cytosol	23.58	41.67
CDX67837	Canola	cytosol, golgi, plasma membrane	23.58	41.67
CDX83400	Canola	cytosol, nucleus, plasma membrane	23.58	41.49
CDY57247	Canola	cytosol	23.11	40.83
GSMUA_Achr10P...	Banana	cytosol	28.77	40.67
PGSC0003DMT400057834	Potato	cytosol	29.48	39.56
Solyc01g098200.2.1	Tomato	cytosol	28.77	38.61
GSMUA_Achr3P08840_001	Banana	cytosol	21.7	38.33
CDY40565	Canola	cytosol	19.34	37.61
CDY28969	Canola	cytosol	19.34	37.61
CDY25982	Canola	cytosol	19.1	36.82
CDY33519	Canola	cytosol	18.87	36.7
CDX77746	Canola	cytosol	18.87	36.7
CDY43438	Canola	cytosol	18.87	36.36
CDY44556	Canola	cytosol, extracellular, plastid	8.02	33.33
TraesCS3A01G467600.2	Wheat	cytosol	27.59	32.23
TraesCS3D01G462100.3	Wheat	cytosol	27.59	32.23
Os01t0936800-01	Rice	cytosol, plasma membrane	28.77	32.11
TraesCS3B01G511900.2	Wheat	cytosol	27.36	31.96
EES04183	Sorghum	cytosol	28.07	31.57
KXG21863	Sorghum	cytosol	26.89	31.49
Zm00001d011904_P001	Maize	cytosol	28.77	31.2
Zm00001d042180_P002	Maize	cytosol	29.48	31.17
HORVU3Hr1G099730.5	Barley	cytosol	27.36	30.85
Zm00001d010495_P002	Maize	cytosol	27.36	30.53
KRG92793	Soybean	cytosol	34.43	30.35
KRH34006	Soybean	cytosol	35.14	28.11
Os05t0373000-01	Rice	cytosol	26.89	23.9

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	GO:A0A078GBE3	UniProt:A0A078GBE3	EnsemblPlants:CDY22664	ProteinID:CDY22664
ProteinID:CDY22664.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00019334001	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0004EE5E3F	InterPro:VAP
SEG:seg	:	:	:	:	:

Description

BnaC08g42980DBnaC08g42980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBE3]

Coordinates

chrLK032134:+:358928..368506

Molecular Weight (calculated)

47505.3 Da

IEP (calculated)

5.411

GRAVY (calculated)

-0.300

Length

424 amino acids

Sequence
(BLAST)

001: MGSLNIEKVG FLNSELIYIY IYICVFSLVA FFLYLIAPSP PISSSVDSSS ERERERERER ESLLQVVAEI LSQSTMNMPL LDIQPPTLKF PVDLKKQTTC
101: MVQLTNTTDR FVAFKVKTTS PKKYCVRPNV GVVAPNSSCE FSVIMQAFKE PPLDLACKDK FLIQSTAVPA DTTDEDITAS MFSKGEGKHI EENKLRVTLV
201: MPSDSPELSP VKGTLKQEAV FEDSMLKDRS YFQSEILPPP QYESEIVKEP RMVGNDELKA SYGAKELVQP KKGVTDFMED LNPANDLKPT HNLDTPTAMN
301: FPGDKGFTNG MTSANGVTYP EVVQLEKRDG QKINASDEHK LVKDIEEMKV KVKALESKLQ QADSTISKLM EERSIGSQHR ESLQQELADL RTKKIVKEKH
401: IGFPLLFVCV VAFINIVIGY GLRT

Best Arabidopsis Sequence Match ( AT1G08820.1 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.