Factsheet for Zm00001d042180_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04183	Sorghum	cytosol	84.79	90.19
Zm00001d011904_P001	Maize	cytosol	84.79	86.96
TraesCS3B01G511900.2	Wheat	cytosol	63.09	69.7
TraesCS3A01G467600.2	Wheat	cytosol	63.09	69.7
TraesCS3D01G462100.3	Wheat	cytosol	63.09	69.7
Os01t0936800-01	Rice	cytosol, plasma membrane	63.84	67.37
HORVU3Hr1G099730.5	Barley	cytosol	62.34	66.49
GSMUA_Achr8P21990_001	Banana	cytosol	38.9	51.83
GSMUA_Achr3P08840_001	Banana	cytosol	29.43	49.17
GSMUA_Achr10P...	Banana	cytosol	36.66	49.0
VIT_14s0030g00730.t01	Wine grape	cytosol	38.15	45.54
VIT_05s0020g01970.t01	Wine grape	cytosol	32.92	45.05
KRH11275	Soybean	cytosol	31.17	44.96
KRH02189	Soybean	cytosol	32.42	44.07
KRH50932	Soybean	cytosol	32.42	44.07
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	25.94	43.15
Solyc01g098200.2.1	Tomato	cytosol	33.42	42.41
PGSC0003DMT400057834	Potato	cytosol	33.42	42.41
Zm00001d049553_P001	Maize	plasma membrane	25.69	42.21
Zm00001d051288_P001	Maize	cytosol	22.94	40.89
Zm00001d010495_P002	Maize	cytosol	38.65	40.79
PGSC0003DMT400027619	Potato	cytosol	35.41	40.0
Zm00001d017390_P001	Maize	cytosol	22.44	40.0
Bra031641.1-P	Field mustard	cytosol	31.17	36.44
CDY06330	Canola	cytosol	31.17	36.44
CDX93534	Canola	cytosol	31.92	34.5
Bra018597.1-P	Field mustard	cytosol	31.67	34.23
Solyc01g067720.2.1	Tomato	plastid	35.16	34.06
CDX95029	Canola	cytosol	31.67	33.96
AT1G08820.3	Thale cress	cytosol	32.67	33.94
CDY32136	Canola	cytosol	31.92	33.68
CDY31124	Canola	cytosol	31.92	33.6
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	24.44	32.89
Bra030744.1-P	Field mustard	cytosol	32.17	32.82
Zm00001d051383_P001	Maize	cytosol, plastid	20.45	31.18
Zm00001d014260_P001	Maize	plastid	13.47	30.34
Zm00001d032507_P001	Maize	cytosol, golgi, plasma membrane	20.45	30.26
CDY22664	Canola	plasma membrane	31.17	29.48
Zm00001d036342_P001	Maize	cytosol	18.2	29.2
KRG92793	Soybean	cytosol	33.92	28.27
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	21.2	28.15
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	21.2	27.42
KRH34006	Soybean	cytosol	34.66	26.23
Zm00001d048612_P001	Maize	cytosol	12.97	7.34

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	UniProt:A0A1D6N1Z3	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	ProteinID:ONM34735.1	ProteinID:ONM34737.1
PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf	SUPFAM:SSF49354
TMHMM:TMhelix	UniParc:UPI0008450C78	InterPro:VAP	EnsemblPlantsGene:Zm00001d042180	EnsemblPlants:Zm00001d042180_P002	EnsemblPlants:Zm00001d042180_T002

Description

VAP27-2

Coordinates

chr3:+:155197945..155203597

Molecular Weight (calculated)

44858.4 Da

IEP (calculated)

5.742

GRAVY (calculated)

-0.251

Length

401 amino acids

Sequence
(BLAST)

001: MGQDLVEIHP RELQFTFEVK KQSSCVVCLT NKSNEYVAFK VKTTSPKRYC VRPNTGVILP RKTCEFTVTM QALRTAPPDM QLKDKFLVQT TVVPYGTSDE
101: ELVPAVFSKE TGRYIEESKL RVVLVSSYQS LEEQPTNGIH DTEPAVEVPL LKEMPNLGSE VPDVAKEIPA PLVQGPAIVT GIPSPVKEVP GLREIPVPLN
201: EAPTLLAEFP SPQKDPSAIT VEHASNVTIE HAPAISIESP PLKQSVPVFK ESPLKQSVAV FKESPPLKQS ISVFKESPPL EETTPKEAVM LSDRGLFNVQ
301: NHQLSHQCVD FLLIHMYQVT EDVQNMKSKL NNLESKLEEA EKMIIRLREE SRNTTQERDE LQQEMVFLRK KGTARSQMGF PLLFVVYVAL LGTCIGYLLR
401: I

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.