Factsheet for PGSC0003DMT400027619

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067720.2.1	Tomato	plastid	93.24	79.95
VIT_05s0020g01970.t01	Wine grape	cytosol	44.51	53.92
KRH02189	Soybean	cytosol	42.82	51.53
KRH50932	Soybean	cytosol	42.82	51.53
KRH11275	Soybean	cytosol	38.31	48.92
PGSC0003DMT400066797	Potato	cytosol	30.14	44.58
GSMUA_Achr8P21990_001	Banana	cytosol	37.75	44.52
GSMUA_Achr10P...	Banana	cytosol	36.34	43.0
PGSC0003DMT400032484	Potato	cytosol, nucleus, plasma membrane	25.63	42.92
GSMUA_Achr3P08840_001	Banana	cytosol	28.73	42.5
PGSC0003DMT400067515	Potato	nucleus	25.92	41.82
PGSC0003DMT400052797	Potato	cytosol	24.79	40.93
PGSC0003DMT400057834	Potato	cytosol	36.34	40.82
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	25.92	40.53
PGSC0003DMT400076826	Potato	cytosol	6.48	38.33
TraesCS3A01G467600.2	Wheat	cytosol	39.15	38.29
TraesCS3D01G462100.3	Wheat	cytosol	39.15	38.29
EES04183	Sorghum	cytosol	40.28	37.93
TraesCS3B01G511900.2	Wheat	cytosol	38.59	37.74
Os01t0936800-01	Rice	cytosol, plasma membrane	40.0	37.37
PGSC0003DMT400066920	Potato	cytosol	27.61	36.7
HORVU3Hr1G099730.5	Barley	cytosol	38.87	36.7
Zm00001d011904_P001	Maize	cytosol	40.0	36.32
KXG21863	Sorghum	cytosol	36.34	35.64
Zm00001d042180_P002	Maize	cytosol	40.0	35.41
Zm00001d010495_P002	Maize	cytosol	35.21	32.89
Os05t0373000-01	Rice	cytosol	33.52	24.95

Protein Annotations

EntrezGene:102588851	Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M1APY1	InterPro:MSP_dom	PFAM:PF00635
EnsemblPlantsGene:PGSC0003DMG400010653	PGSC:PGSC0003DMG400010653	EnsemblPlants:PGSC0003DMT400027619	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000295D6B4	InterPro:VAP
RefSeq:XP_006342733.1	RefSeq:XP_006342734.1	RefSeq:XP_006342735.1	RefSeq:XP_015162159.1	RefSeq:XP_015162160.1	SEG:seg

Description

VAP27-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400010653]

Coordinates

chr1:-:59449964..59455298

Molecular Weight (calculated)

39642.6 Da

IEP (calculated)

5.654

GRAVY (calculated)

-0.443

Length

355 amino acids

Sequence
(BLAST)

001: MINTQLVEIQ PCELKFTFEV KKQSSCAVHI TNITDQYVAF KVKTTSPKKY CVRPNIGVIK PKSTYDFTVT MQAQRAAPSD LQCKDKFLIQ CTVVPFGTNE
101: EEIPPSMFNK DNGKYIDECK LKVVLVSPPQ SPVLQPANGI SKQGASIETS MQQEKFPSGV ENLPPAQTVV KNNKDIKFEE ETEEPRLGNI ADDKDLSFAK
201: NTESNIDEID ETICQVVENK KGADFDAEEE EPRLAKTAEN VKLNSPKNRE SNANEVEVVK SRHLNTETKL SLSKDVEELK SKINSLGSQL IEAECIIAKL
301: KEERRSTIKD VEILKQELAL LKTKGVGKRS QVGFPPLFLC MVALICLTIG YLVRA

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.