Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28066 | Soybean | cytosol | 58.49 | 69.27 |
| Solyc08g078690.2.1 | Tomato | cytosol | 70.75 | 67.57 |
| VIT_13s0106g00400.t01 | Wine grape | cytosol | 42.45 | 66.18 |
| KRH57391 | Soybean | endoplasmic reticulum, mitochondrion | 71.7 | 63.07 |
| KRH04117 | Soybean | cytosol, nucleus, plasma membrane | 70.75 | 62.24 |
| VIT_02s0154g00500.t01 | Wine grape | cytosol, nucleus, plasma membrane | 66.51 | 59.24 |
| KRH77373 | Soybean | endoplasmic reticulum | 65.57 | 57.68 |
| PGSC0003DMT400076826 | Potato | cytosol | 14.62 | 51.67 |
| PGSC0003DMT400066797 | Potato | cytosol | 58.02 | 51.25 |
| PGSC0003DMT400066920 | Potato | cytosol | 62.26 | 49.44 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 52.83 | 49.34 |
| PGSC0003DMT400052797 | Potato | cytosol | 42.45 | 41.86 |
| PGSC0003DMT400067515 | Potato | nucleus | 41.98 | 40.45 |
| PGSC0003DMT400057834 | Potato | cytosol | 44.34 | 29.75 |
| PGSC0003DMT400027619 | Potato | cytosol | 42.92 | 25.63 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | UniProt:M1AXH5 | InterPro:MSP_dom | PFAM:PF00635 | EnsemblPlantsGene:PGSC0003DMG401012477 | PGSC:PGSC0003DMG401012477 |
| EnsemblPlants:PGSC0003DMT400032484 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI000296AF7A | InterPro:VAP | SEG:seg | : |
Description
VAP25 [Source:PGSC_GENE;Acc:PGSC0003DMG401012477]
Coordinates
chr8:-:505080..508975
Molecular Weight (calculated)
23410.1 Da
IEP (calculated)
7.844
GRAVY (calculated)
-0.369
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAETELLT VDPLELKFAF ELKKQISCSL QLSNKTENHV AFKVKTTNPK KYCVRPNTGI VSPRSTCDVI VTMQAQKEAP ADMQCKDKFL LQSVVASAVT
101: NPKDITQEMF NKEPGRVVEE CKLKVIYLPP PQPPSPVAEG SEEGSSPRQS LTENDNQNGS ELTRTFLETH DKSTEEIMRR DISKSRSGGV SFKFVIVVGL
201: IGVVLGYILK SS
101: NPKDITQEMF NKEPGRVVEE CKLKVIYLPP PQPPSPVAEG SEEGSSPRQS LTENDNQNGS ELTRTFLETH DKSTEEIMRR DISKSRSGGV SFKFVIVVGL
201: IGVVLGYILK SS
001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSIFMFN FSLRDLSWTT RLDIKKTHLR
201: YFSQFFQVCH RQNHVTSSFA FALFKTDFWR
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSIFMFN FSLRDLSWTT RLDIKKTHLR
201: YFSQFFQVCH RQNHVTSSFA FALFKTDFWR
Arabidopsis Description
PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.