Factsheet for PGSC0003DMT400057834

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g098200.2.1	Tomato	cytosol	93.35	93.35
VIT_14s0030g00730.t01	Wine grape	cytosol	50.0	47.02
GSMUA_Achr10P...	Banana	cytosol	43.04	45.33
PGSC0003DMT400076826	Potato	cytosol	8.54	45.0
GSMUA_Achr8P21990_001	Banana	cytosol	42.41	44.52
PGSC0003DMT400032484	Potato	cytosol, nucleus, plasma membrane	29.75	44.34
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	29.43	40.97
PGSC0003DMT400066797	Potato	cytosol	30.38	40.0
GSMUA_Achr3P08840_001	Banana	cytosol	29.11	38.33
PGSC0003DMT400067515	Potato	nucleus	26.27	37.73
CDX93534	Canola	cytosol	43.67	37.2
PGSC0003DMT400066920	Potato	cytosol	31.33	37.08
Bra018597.1-P	Field mustard	cytosol	43.35	36.93
PGSC0003DMT400052797	Potato	cytosol	25.0	36.74
CDX95029	Canola	cytosol	43.35	36.63
CDY06330	Canola	cytosol	39.56	36.44
Bra031641.1-P	Field mustard	cytosol	39.56	36.44
EES04183	Sorghum	cytosol	43.35	36.34
PGSC0003DMT400027619	Potato	cytosol	40.82	36.34
Os01t0936800-01	Rice	cytosol, plasma membrane	42.41	35.26
CDY32136	Canola	cytosol	42.09	35.0
CDY31124	Canola	cytosol	42.09	34.91
TraesCS3A01G467600.2	Wheat	cytosol	39.87	34.71
TraesCS3B01G511900.2	Wheat	cytosol	39.87	34.71
TraesCS3D01G462100.3	Wheat	cytosol	39.87	34.71
Zm00001d011904_P001	Maize	cytosol	42.72	34.53
Bra030744.1-P	Field mustard	cytosol	42.72	34.35
AT1G08820.3	Thale cress	cytosol	41.46	33.94
KXG21863	Sorghum	cytosol	38.61	33.7
Zm00001d042180_P002	Maize	cytosol	42.41	33.42
HORVU3Hr1G099730.5	Barley	cytosol	39.56	33.24
Zm00001d010495_P002	Maize	cytosol	38.61	32.11
CDY22664	Canola	plasma membrane	39.56	29.48
KRG92793	Soybean	cytosol	42.09	27.65
Os05t0373000-01	Rice	cytosol	40.51	26.83
KRH34006	Soybean	cytosol	43.67	26.04

Protein Annotations

EntrezGene:102583399	Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005886	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M1C1R7	InterPro:MSP_dom
PFAM:PF00635	EnsemblPlantsGene:PGSC0003DMG402022455	PGSC:PGSC0003DMG402022455	EnsemblPlants:PGSC0003DMT400057834	PIRSF:PIRSF019693	PFscan:PS50202
PANTHER:PTHR10809	PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI00029573B1
InterPro:VAP	RefSeq:XP_006347836.1	SEG:seg	:	:	:

Description

VAP27-2 [Source:PGSC_GENE;Acc:PGSC0003DMG402022455]

Coordinates

chr1:-:75841288..75848717

Molecular Weight (calculated)

35902.9 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.625

Length

316 amino acids

Sequence
(BLAST)

001: MYSDLVEIAP RELKFIFEPK KQSSCTIRLI NKSQNHVAFK VKTTSPKKYC VRPNTGIIKP RASCDFTVTM QAQKAPPPDM ACKDKFLVQC TVVAEETVEE
101: DITSAMFSKD DGKYVQENKM RVILVSPPGS PVLSPINVGH SDLPSYIDSP REDQVHGNEN ISSHQEGDVN GVHNHNGRYQ ESLTRDQVNL LNQNTPKELD
201: ENVKEFRKEN ADMQMEGNHA QLETRKHDEE MDLVKDVASM KSKIIELERK LSEAKDTISR LTEEKKSTAQ ERESLQRELV MLTSKKGGRK VRVGFPLLYV
301: VTVAFISMVF GYLLHY

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.