Factsheet for GSMUA_Achr8P21990_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	76.41	76.67
GSMUA_Achr3P08840_001	Banana	cytosol	53.82	67.5
GSMUA_Achr5P20880_001	Banana	cytosol	40.2	50.63
VIT_05s0020g01970.t01	Wine grape	cytosol	48.17	49.49
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	38.54	48.54
GSMUA_Achr1P20230_001	Banana	cytosol	37.54	47.68
GSMUA_Achr1P20280_001	Banana	cytosol	32.89	46.26
GSMUA_Achr6P36770_001	Banana	cytosol	31.89	45.93
GSMUA_Achr11P...	Banana	cytosol	29.9	45.0
VIT_14s0030g00730.t01	Wine grape	cytosol	49.83	44.64
KRH02189	Soybean	cytosol	43.52	44.41
KRH50932	Soybean	cytosol	43.52	44.41
KRH11275	Soybean	cytosol	40.86	44.24
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	34.88	44.12
GSMUA_Achr7P07100_001	Banana	cytosol	34.22	43.28
PGSC0003DMT400057834	Potato	cytosol	44.52	42.41
Os01t0936800-01	Rice	cytosol, plasma membrane	53.49	42.37
TraesCS3A01G467600.2	Wheat	cytosol	50.83	42.15
TraesCS3B01G511900.2	Wheat	cytosol	50.83	42.15
TraesCS3D01G462100.3	Wheat	cytosol	50.83	42.15
GSMUA_Achr7P06650_001	Banana	cytosol	29.9	41.67
EES04183	Sorghum	cytosol	52.16	41.64
Solyc01g098200.2.1	Tomato	cytosol	43.52	41.46
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	32.89	41.25
HORVU3Hr1G099730.5	Barley	cytosol	50.83	40.69
Zm00001d011904_P001	Maize	cytosol	51.49	39.64
KXG21863	Sorghum	cytosol	47.51	39.5
GSMUA_Achr8P11120_001	Banana	cytosol	36.54	39.29
Zm00001d042180_P002	Maize	cytosol	51.83	38.9
PGSC0003DMT400027619	Potato	cytosol	44.52	37.75
Zm00001d010495_P002	Maize	cytosol	47.51	37.63
GSMUA_Achr11P...	Banana	cytosol	28.57	37.39
Bra031641.1-P	Field mustard	cytosol	40.2	35.28
CDY06330	Canola	cytosol	39.87	34.99
CDX93534	Canola	cytosol	42.86	34.77
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	26.91	34.76
Bra018597.1-P	Field mustard	cytosol	42.52	34.5
CDX95029	Canola	cytosol	42.86	34.49
CDY32136	Canola	cytosol	43.19	34.21
CDY31124	Canola	cytosol	43.19	34.12
Bra030744.1-P	Field mustard	cytosol	43.85	33.59
AT1G08820.3	Thale cress	cytosol	42.86	33.42
Solyc01g067720.2.1	Tomato	plastid	44.19	32.13
CDY22664	Canola	plasma membrane	42.19	29.95
Os05t0373000-01	Rice	cytosol	46.51	29.35
KRG92793	Soybean	cytosol	43.85	27.44
KRH34006	Soybean	cytosol	44.52	25.28

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr8G21990_001
EnsemblPlants:GSMUA_Achr8P21990_001	EnsemblPlants:GSMUA_Achr8T21990_001	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0TSK2
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF45
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000295E31C	InterPro:VAP	SEG:seg

Description

MSP domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G21990_001]

Coordinates

chr8:-:26719533..26725326

Molecular Weight (calculated)

33326.3 Da

IEP (calculated)

5.854

GRAVY (calculated)

-0.206

Length

301 amino acids

Sequence
(BLAST)

001: MGAGQVLVEI QPQELKFAFE LKKQSSCSIQ LENKSKDYVA FKVKTTSPKR YCVRPNIGIL LPRSTCDFTV TMQAPKEAPP DMQLKDKFLV QSTVVPYGTT
101: DEDIVPSFFS KENGRYIQEN KLRVVLVSPP HSPALEPINV ALRQEPANEI PDSAVTCIPI DGVSQQEPAN EVPILRNISV SDNVSVKQEP VQEITISKDT
201: SIPNEQALSG VAEITPSHVG KDIDDLKLKL NNIEVKLNEA EKTIMSLRKE NSAAVQESEK LQQEIALLRK KSAVRIQAGF PFLFVVFLAL VGMTLGYLLH
301: S

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.