Factsheet for Bra018597.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93534	Canola	cytosol	99.46	99.46
Bra030744.1-P	Field mustard	cytosol	85.18	80.41
Bra031641.1-P	Field mustard	cytosol	71.97	77.84
AT1G08820.3	Thale cress	cytosol	79.78	76.68
VIT_14s0030g00730.t01	Wine grape	cytosol	41.51	45.83
Bra003313.1-P	Field mustard	cytosol	26.68	44.39
PGSC0003DMT400057834	Potato	cytosol	36.93	43.35
Solyc01g098200.2.1	Tomato	cytosol	36.39	42.72
GSMUA_Achr8P21990_001	Banana	cytosol	34.5	42.52
Bra000978.1-P	Field mustard	cytosol	26.95	42.37
GSMUA_Achr10P...	Banana	cytosol	33.96	42.0
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	26.95	41.84
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	26.68	41.25
Bra007547.1-P	Field mustard	cytosol	26.42	41.18
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	26.42	41.0
GSMUA_Achr3P08840_001	Banana	cytosol	25.88	40.0
Bra035442.1-P	Field mustard	cytosol	11.59	39.81
Bra022110.1-P	Field mustard	cytosol	22.37	38.07
Bra024958.1-P	Field mustard	cytosol	21.56	36.7
Bra022111.1-P	Field mustard	cytosol	21.29	35.91
Bra017499.1-P	Field mustard	cytosol	21.29	35.91
Os01t0936800-01	Rice	cytosol, plasma membrane	34.23	33.42
TraesCS3A01G467600.2	Wheat	cytosol	32.61	33.33
TraesCS3D01G462100.3	Wheat	cytosol	32.61	33.33
TraesCS3B01G511900.2	Wheat	cytosol	32.34	33.06
EES04183	Sorghum	cytosol	33.42	32.89
KRG92793	Soybean	cytosol	42.32	32.64
HORVU3Hr1G099730.5	Barley	cytosol	32.61	32.18
Zm00001d011904_P001	Maize	cytosol	33.69	31.97
Zm00001d042180_P002	Maize	cytosol	34.23	31.67
KXG21863	Sorghum	cytosol	29.38	30.11
KRH34006	Soybean	cytosol	42.86	30.0
Zm00001d010495_P002	Maize	cytosol	30.73	30.0
Os05t0373000-01	Rice	cytosol	32.08	24.95

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra018597	EnsemblPlants:Bra018597.1	EnsemblPlants:Bra018597.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4DQ06
InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf
SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000253E813	InterPro:VAP	:	:

Description

AT1G08820 (E=5e-091) VAP27-2 | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule

Coordinates

chrA06:-:3049136..3051507

Molecular Weight (calculated)

41513.9 Da

IEP (calculated)

7.013

GRAVY (calculated)

-0.465

Length

371 amino acids

Sequence
(BLAST)

001: MNMPLLDIQP RTLKFVVDLK KQSTCVVQLT NTTNLFVAFK VKTTSPKKYC VRPNVGVVAP KSSCEFSVIM QAFKEPPPDM VCKDKFLIQS TAVPEETTDE
101: DITASMFSKA EGKHVEENKL RVTLVLPSNS PELSPVKGTL KQEAVFEDSI LKDRVYGQSE TLRPPQYESE IVKEPRMVGH DELKAPYDAK EANDLKATKG
201: GYATSNLEKE AEFDPIRYAD DGRGIKSTHN LDTPTKMAMD LDQGFANGKA SANSVSYSDE PKIPRNRDVV QMQQTDAQNI KALEESKLVK DIEGMKLKVN
301: ALESKLKQAD STISKLMEER STSFQHRESL QQELAELRTK KIVKEVHIGF PLLYVCVVAF ISIVIGYCPR T

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.