Factsheet for VIT_14s0030g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g01970.t01	Wine grape	cytosol	50.0	57.34
PGSC0003DMT400057834	Potato	cytosol	47.02	50.0
VIT_13s0106g00400.t01	Wine grape	cytosol	20.24	50.0
GSMUA_Achr10P...	Banana	cytosol	44.64	50.0
GSMUA_Achr8P21990_001	Banana	cytosol	44.64	49.83
Solyc01g098200.2.1	Tomato	cytosol	46.43	49.37
VIT_02s0154g00500.t01	Wine grape	cytosol, nucleus, plasma membrane	34.52	48.74
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	33.63	47.28
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	33.04	46.44
GSMUA_Achr3P08840_001	Banana	cytosol	30.65	42.92
Bra031641.1-P	Field mustard	cytosol	43.45	42.57
CDY06330	Canola	cytosol	43.15	42.27
TraesCS3D01G462100.3	Wheat	cytosol	45.54	42.15
Os01t0936800-01	Rice	cytosol, plasma membrane	47.62	42.11
TraesCS3B01G511900.2	Wheat	cytosol	45.24	41.87
CDY32136	Canola	cytosol	47.32	41.84
CDY31124	Canola	cytosol	47.32	41.73
TraesCS3A01G467600.2	Wheat	cytosol	44.94	41.6
CDX93534	Canola	cytosol	45.83	41.51
Bra018597.1-P	Field mustard	cytosol	45.83	41.51
Bra030744.1-P	Field mustard	cytosol	47.92	40.97
CDX95029	Canola	cytosol	45.54	40.91
EES04183	Sorghum	cytosol	45.24	40.32
HORVU3Hr1G099730.5	Barley	cytosol	44.94	40.16
Zm00001d011904_P001	Maize	cytosol	45.54	39.13
AT1G08820.3	Thale cress	cytosol	44.94	39.12
Zm00001d042180_P002	Maize	cytosol	45.54	38.15
KXG21863	Sorghum	cytosol	38.69	35.91
CDY22664	Canola	plasma membrane	44.05	34.91
KRG92793	Soybean	cytosol	49.4	34.51
Zm00001d010495_P002	Maize	cytosol	38.39	33.95
KRH34006	Soybean	cytosol	49.7	31.51
Os05t0373000-01	Rice	cytosol	38.99	27.46
VIT_00s0287g00080.t01	Wine grape	extracellular	17.26	16.67

Protein Annotations

EntrezGene:100241913	wikigene:100241913	Gene3D:2.60.40.10	MapMan:20.7.1	ProteinID:CBI34290	ProteinID:CBI34290.3
ncoils:Coil	UniProt:D7TUW5	EMBL:FN596249	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005886	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	EntrezGene:LOC100241913	wikigene:LOC100241913	InterPro:MSP_dom
PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf
SUPFAM:SSF49354	TIGR:TC61872	TIGR:TC63560	TMHMM:TMhelix	UniParc:UPI000198497F	InterPro:VAP
ArrayExpress:VIT_14s0030g00730	EnsemblPlantsGene:VIT_14s0030g00730	EnsemblPlants:VIT_14s0030g00730.t01	unigene:Vvi.1106	RefSeq:XP_002266266	RefSeq:XP_002266266.1
RefSeq:XP_010659989.1	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:4929728..4947243

Molecular Weight (calculated)

37799.6 Da

IEP (calculated)

5.374

GRAVY (calculated)

-0.397

Length

336 amino acids

Sequence
(BLAST)

001: MYSELVDIQP RELKFTFEVK KQSSCSIRLV NNTYHHVAYK VKTTSPKKYC VRPNTGVLKP NSTCDFTVTM QAQRSAPPDM ICKDKFLVQS TIVPAGTSDE
101: DITPGMFSKD SGKYIEENKL RVILISPPNS PVLSPINGAL TQVPVYEASL PKDEVLSRVK IVTPHHVVAK DEESEMLDEE LKPAAELVDE ELKPAAKLVD
201: DKELKPVAQK VDTEELKPMA QKVDEEFKTA AQVAQMVDDM ESKQARDVEE LKLVKDIEEM KSKLNQLESK LSEAEVTISK LTEERRLTIQ ERENLQQELA
301: VFQSKRSGRR AQAGFPLLFV CMVALVSIML GYLCHS

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.