Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28066 | Soybean | cytosol | 64.71 | 49.16 |
| VIT_02s0154g00500.t01 | Wine grape | cytosol, nucleus, plasma membrane | 82.35 | 47.06 |
| PGSC0003DMT400032484 | Potato | cytosol, nucleus, plasma membrane | 66.18 | 42.45 |
| KRH57391 | Soybean | endoplasmic reticulum, mitochondrion | 69.85 | 39.42 |
| KRH04117 | Soybean | cytosol, nucleus, plasma membrane | 69.12 | 39.0 |
| Solyc08g078690.2.1 | Tomato | cytosol | 63.24 | 38.74 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 64.71 | 36.82 |
| KRH77373 | Soybean | endoplasmic reticulum | 63.97 | 36.1 |
| VIT_15s0048g00600.t01 | Wine grape | cytosol, nucleus, plasma membrane | 59.56 | 33.89 |
| VIT_05s0020g01970.t01 | Wine grape | cytosol | 50.74 | 23.55 |
| VIT_14s0030g00730.t01 | Wine grape | cytosol | 50.0 | 20.24 |
| VIT_00s0287g00080.t01 | Wine grape | extracellular | 19.12 | 7.47 |
Protein Annotations
| EntrezGene:100251599 | wikigene:100251599 | Gene3D:2.60.40.10 | MapMan:20.7.1 | EMBL:AM423734 | ProteinID:CAN79951 |
| ProteinID:CAN79951.1 | ProteinID:CCB58750 | ProteinID:CCB58750.1 | UniProt:F6HVN7 | EMBL:FN596257 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 |
| InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | EntrezGene:LOC100251599 | wikigene:LOC100251599 | InterPro:MSP_dom |
| PFAM:PF00635 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf | SUPFAM:SSF49354 |
| UniParc:UPI0002109C44 | InterPro:VAP | ArrayExpress:VIT_13s0106g00400 | EnsemblPlantsGene:VIT_13s0106g00400 | EnsemblPlants:VIT_13s0106g00400.t01 | RefSeq:XP_003633497 |
| RefSeq:XP_003633497.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:-:10033869..10034333
Molecular Weight (calculated)
15407.1 Da
IEP (calculated)
10.222
GRAVY (calculated)
-0.246
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKLLSIEPL ERKFPFELKK QISCSLQLPN KIENHVVFKV KTMNSKKYHV HLNTRIVLPR STCDVIVTMR AQKEAPSNLH YKDKFLIRSA VLIAGMSQTD
101: ITVDMLNKDS GHIVKECKLK VVYVSPPQPP SPVPEG
101: ITVDMLNKDS GHIVKECKLK VVYVSPPQPP SPVPEG
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.