Factsheet for VIT_05s0020g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02189	Soybean	cytosol	59.04	58.64
KRH50932	Soybean	cytosol	58.02	57.63
KRH11275	Soybean	cytosol	49.49	52.16
VIT_13s0106g00400.t01	Wine grape	cytosol	23.55	50.74
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	41.3	50.63
VIT_14s0030g00730.t01	Wine grape	cytosol	57.34	50.0
GSMUA_Achr8P21990_001	Banana	cytosol	49.49	48.17
VIT_02s0154g00500.t01	Wine grape	cytosol, nucleus, plasma membrane	38.91	47.9
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	38.91	47.7
GSMUA_Achr10P...	Banana	cytosol	46.08	45.0
PGSC0003DMT400027619	Potato	cytosol	53.92	44.51
GSMUA_Achr3P08840_001	Banana	cytosol	34.13	41.67
TraesCS3A01G467600.2	Wheat	cytosol	46.42	37.47
TraesCS3B01G511900.2	Wheat	cytosol	46.42	37.47
TraesCS3D01G462100.3	Wheat	cytosol	46.42	37.47
Os01t0936800-01	Rice	cytosol, plasma membrane	48.46	37.37
Solyc01g067720.2.1	Tomato	plastid	52.56	37.2
EES04183	Sorghum	cytosol	47.1	36.6
HORVU3Hr1G099730.5	Barley	cytosol	46.42	36.17
Zm00001d011904_P001	Maize	cytosol	46.08	34.53
Zm00001d010495_P002	Maize	cytosol	43.0	33.16
KXG21863	Sorghum	cytosol	40.96	33.15
Zm00001d042180_P002	Maize	cytosol	45.05	32.92
Os05t0373000-01	Rice	cytosol	41.64	25.58
VIT_00s0287g00080.t01	Wine grape	extracellular	21.16	17.82

Protein Annotations

EntrezGene:100247810	wikigene:100247810	Gene3D:2.60.40.10	MapMan:20.7.1	ProteinID:CBI26121	ProteinID:CBI26121.3
ncoils:Coil	UniProt:D7T6K0	EMBL:FN595749	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	EntrezGene:LOC100247810	wikigene:LOC100247810	InterPro:MSP_dom	PFAM:PF00635
PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF66	InterPro:PapD-like_sf	SUPFAM:SSF49354
TIGR:TC53808	TMHMM:TMhelix	UniParc:UPI00015C7CB9	InterPro:VAP	ArrayExpress:VIT_05s0020g01970	EnsemblPlantsGene:VIT_05s0020g01970
EnsemblPlants:VIT_05s0020g01970.t01	unigene:Vvi.16045	RefSeq:XP_002277190	RefSeq:XP_002277190.1	RefSeq:XP_010649789.1	RefSeq:XP_010649790.1
RefSeq:XP_010649792.1	RefSeq:XP_010649794.1	RefSeq:XP_019075251.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:3685011..3690592

Molecular Weight (calculated)

32966.1 Da

IEP (calculated)

8.208

GRAVY (calculated)

-0.327

Length

293 amino acids

Sequence
(BLAST)

001: MELLEIQPRE LKFTFELKKQ SSCSIHLVNK SDQYLAFKVK TTSPKRYCVR PNTGVVKPNA ECDVMVTMQA QRVAPPDMQC KDKFLIQSTV VPYGTTETDI
101: RSDMFAKDSG KYLEEKKLRV VLIGPAHSPV LLPLNGLLKQ DPCHENFSQK DQLLSGVENT PPAHVVAKDV EGFKTAKVTD ESRAAKDVES RPAEDVDELK
201: LTNDIAKENL AKDIEELNSK LNVVELNLSE AKLIITKLTE ERSMATREKE TLKHELAMLR KKSDVRRVRV GFPFLFVLII ALIGIAAGYL MHS

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.