Factsheet for VIT_02s0154g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00400.t01	Wine grape	cytosol	47.06	82.35
KRH57391	Soybean	endoplasmic reticulum, mitochondrion	73.11	72.2
KRH28066	Soybean	cytosol	53.78	71.51
KRH04117	Soybean	cytosol, nucleus, plasma membrane	72.27	71.37
KRH77373	Soybean	endoplasmic reticulum	68.49	67.63
PGSC0003DMT400032484	Potato	cytosol, nucleus, plasma membrane	59.24	66.51
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	65.97	65.69
Solyc08g078690.2.1	Tomato	cytosol	60.92	65.32
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	60.5	60.25
VIT_05s0020g01970.t01	Wine grape	cytosol	47.9	38.91
VIT_14s0030g00730.t01	Wine grape	cytosol	48.74	34.52
VIT_00s0287g00080.t01	Wine grape	extracellular	27.73	18.97

Protein Annotations

EntrezGene:100253999	wikigene:100253999	Gene3D:2.60.40.10	MapMan:20.7.1	ProteinID:CBI31922	ProteinID:CBI31922.3
ncoils:Coil	UniProt:D7TN49	EMBL:FN596001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	EntrezGene:LOC100253999	wikigene:LOC100253999	InterPro:MSP_dom	PFAM:PF00635
PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf	SUPFAM:SSF49354
TMHMM:TMhelix	UniParc:UPI00015CDCCE	InterPro:VAP	ArrayExpress:VIT_02s0154g00500	EnsemblPlantsGene:VIT_02s0154g00500	EnsemblPlants:VIT_02s0154g00500.t01
unigene:Vvi.20987	RefSeq:XP_002270502	RefSeq:XP_002270502.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:5258569..5261120

Molecular Weight (calculated)

26032.3 Da

IEP (calculated)

9.228

GRAVY (calculated)

-0.394

Length

238 amino acids

Sequence
(BLAST)

001: MSTGELLSIE PLELKFPFEL KKQISCSLQL SNKTENHVVF KVKTTNPKKY CVRPNTGIVL PRSTCDILVT MQAQKEAPSD LHCKDKFLLQ SAVVTAGTSQ
101: TDITADMFNK DSGHIVEECK LKVVYVSPPQ PPSPVPEGSE EGSSPKGPST DNGNPSGPEF ASVTKALAKS QENSSETRAL ISKLTEERNN AIRRNSKLRQ
201: ELDLLKHDGK KNRGGVSFMF VAIVGLIGII VGYFIKKT

Best Arabidopsis Sequence Match ( AT3G60600.1 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.